RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 KCNA2P16389 499 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 LAG3P18627 525 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 NT5C2P49902 561 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 PDE1AP54750 535 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 MFAP1P55081 439 aaKnown RBP10.68□□□□□ -0.7
SYNE2-224ENST00000557024 KRT76Q01546 638 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 ANGPT1Q15389 498 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 NLRX1Q86UT6 975 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 KIAA2013Q8IYS2 634 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 TDRD5Q8NAT2 981 aaKnown RBP10.68□□□□□ -0.7
SYNE2-224ENST00000557024 CASP10Q92851 521 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 NECTIN4Q96NY8 510 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 ADAM2Q99965 735 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 CWH43Q9H720 699 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 PUF60Q9UHX1 559 aaKnown RBP10.68□□□□□ -0.7
SYNE2-224ENST00000557024 GINS2Q9Y248 185 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 LZTS1Q9Y250 596 aa10.68□□□□□ -0.7
SYNE2-224ENST00000557024 CYTH3O43739 400 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 PBX3P40426 434 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 ITIH3Q06033 890 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 SEC23AQ15436 765 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 RARS2Q5T160 578 aaKnown RBP10.67□□□□□ -0.7
SYNE2-224ENST00000557024 XRRA1Q6P2D8 792 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 USP17L6PQ6QN14 398 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 TMC7Q7Z402 723 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 PLEKHM2Q8IWE5 1019 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 CCDC105Q8IYK2 499 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 ZDHHC14Q8IZN3 488 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 C12orf76Q8N812 135 aaPredicted RBP10.67□□□□□ -0.7
SYNE2-224ENST00000557024 SMARCC2Q8TAQ2 1214 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 RILPL2Q969X0 211 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 PCYT2Q99447 389 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 KRT23Q9C075 422 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 KDM4CQ9H3R0 1056 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 RIOX1Q9H6W3 641 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 ERVK-5Q9HDB9 667 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 NGRNQ9NPE2 291 aaKnown RBP10.67□□□□□ -0.7
SYNE2-224ENST00000557024 PCDHA2Q9Y5H9 948 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 HCFC2Q9Y5Z7 792 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 PLXNA4Q9HCM2 1894 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 FRYLO94915 3013 aa10.67□□□□□ -0.7
SYNE2-224ENST00000557024 KDM3AQ9Y4C1 1321 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 RPS6KA5O75582 802 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 LMNAP02545 664 aaKnown RBP10.66□□□□□ -0.7
SYNE2-224ENST00000557024 NPR3P17342 541 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 ITGB5P18084 799 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 AOC1P19801 751 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 MTHFRP42898 656 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 PLCB3Q01970 1234 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 GRM4Q14833 912 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 PLCB4Q15147 1175 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 IMMTQ16891 758 aaKnown RBP10.66□□□□□ -0.7
SYNE2-224ENST00000557024 KANK3Q6NY19 840 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 SLC24A5Q71RS6 500 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 CYB5R4Q7L1T6 521 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 TICAM2Q86XR7 235 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 DTWD2Q8NBA8 298 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 CUL5Q93034 780 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 MARVELD3Q96A59 401 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 GPRASP2Q96D09 838 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 CNTNAP3BQ96NU0 1288 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 CNTNAP3Q9BZ76 1288 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 ATP6V0A4Q9HBG4 840 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 RGS18Q9NS28 235 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 C1orf112Q9NSG2 853 aa10.66□□□□□ -0.7
SYNE2-224ENST00000557024 DBR1Q9UK59 544 aaKnown RBP10.66□□□□□ -0.7
SYNE2-224ENST00000557024 NOC2LQ9Y3T9 749 aaKnown RBP10.66□□□□□ -0.7
SYNE2-224ENST00000557024 EP300Q09472 2414 aaPredicted RBP10.66□□□□□ -0.7
SYNE2-224ENST00000557024 C2orf71A6NGG8 1288 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 C9IYK1 514 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 MAP3K7O43318 606 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 CLASP2O75122 1294 aaKnown RBP10.65□□□□□ -0.7
SYNE2-224ENST00000557024 SDSP20132 328 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 CA8P35219 290 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 KRT17Q04695 432 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 PTGDRQ13258 359 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 MTMR1Q13613 665 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 SMC1AQ14683 1233 aaKnown RBP10.65□□□□□ -0.7
SYNE2-224ENST00000557024 KCNT2Q6UVM3 1135 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 LRRC55Q6ZSA7 311 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 SKAP1Q86WV1 359 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 SIX5Q8N196 739 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 MRPL43Q8N983 215 aaKnown RBP10.65□□□□□ -0.7
SYNE2-224ENST00000557024 TMEM40Q8WWA1 233 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 CDHR1Q96JP9 859 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 ZNF558Q96NG5 402 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 PPP1R16BQ96T49 567 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 HINFPQ9BQA5 517 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 AZI2Q9H6S1 392 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 CNNM2Q9H8M5 875 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 SENP2Q9HC62 589 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 TMEM161AQ9NX61 479 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 FBXL21Q9UKT6 434 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 ST3GAL5Q9UNP4 418 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 R4GN57 208 aa10.65□□□□□ -0.7
SYNE2-224ENST00000557024 CACNA1BQ00975 2339 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 SMIM35A0A1B0GVV1 85 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 MEIS2O14770 477 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 EOMESO95936 686 aa10.64□□□□□ -0.71
SYNE2-224ENST00000557024 PPM1AP35813 382 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms