RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 NID2Q14112 1375 aa20.75■□□□□ 0.91
VIPAS39-209ENST00000556909 GPR32O75388 356 aa20.75■□□□□ 0.91
VIPAS39-209ENST00000556909 HMGB1P09429 215 aaKnown RBP20.75■□□□□ 0.91
VIPAS39-209ENST00000556909 CPA1P15085 419 aa20.75■□□□□ 0.91
VIPAS39-209ENST00000556909 SMAP1Q8IYB5 467 aaPredicted RBP20.75■□□□□ 0.91
VIPAS39-209ENST00000556909 COLGALT1Q8NBJ5 622 aa20.75■□□□□ 0.91
VIPAS39-209ENST00000556909 KCNH6Q9H252 994 aa20.75■□□□□ 0.91
VIPAS39-209ENST00000556909 TLE6Q9H808 572 aa20.75■□□□□ 0.91
VIPAS39-209ENST00000556909 TMEM161AQ9NX61 479 aa20.75■□□□□ 0.91
VIPAS39-209ENST00000556909 USP15Q9Y4E8 981 aaPredicted RBP20.75■□□□□ 0.91
VIPAS39-209ENST00000556909 CCDC196A0A1B0GTZ2 297 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 FGF18O76093 207 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 FGFR1P11362 822 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 CLCN3P51790 818 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 FGD1P98174 961 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 APOBRQ0VD83 1088 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 DSC3Q14574 896 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 MCTP2Q6DN12 878 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 TRMT1LQ7Z2T5 733 aaKnown RBP20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 ALYREFQ86V81 257 aaKnown RBP20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 THNSL1Q8IYQ7 743 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 METTL13Q8N6R0 699 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 CCDC12Q8WUD4 166 aaPredicted RBP20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 FBXL18Q96ME1 805 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 ATP6V0A4Q9HBG4 840 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 C6orf50Q9HD87 102 aa20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 TYW1Q9NV66 732 aaKnown RBP20.74■□□□□ 0.91
VIPAS39-209ENST00000556909 KMT2EQ8IZD2 1858 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 LOC730098B7Z3J9 87 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 PER2O15055 1255 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 CDC45O75419 566 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 PSAPP07602 524 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 RBM10P98175 930 aaKnown RBP20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 PKN1Q16512 942 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 DUSP6Q16828 381 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 PRR16Q569H4 304 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 VN1R2Q8NFZ6 395 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 MICAL1Q8TDZ2 1067 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 EDAQ92838 391 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 LENG9Q96B70 501 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 CWH43Q9H720 699 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 ELAC1Q9H777 363 aaKnown RBP20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 GABBR1Q9UBS5 961 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 TCEAL9Q9UHQ7 104 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 CEP131Q9UPN4 1083 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 PCDHA10Q9Y5I2 948 aa20.73■□□□□ 0.91
VIPAS39-209ENST00000556909 FSCN2O14926 492 aa20.72■□□□□ 0.91
VIPAS39-209ENST00000556909 LAG3P18627 525 aa20.72■□□□□ 0.91
VIPAS39-209ENST00000556909 CIITAP33076 1130 aa20.72■□□□□ 0.91
VIPAS39-209ENST00000556909 ERVFC1P60507 584 aa20.72■□□□□ 0.91
VIPAS39-209ENST00000556909 FAM189BP81408 668 aa20.72■□□□□ 0.91
VIPAS39-209ENST00000556909 NHLH1Q02575 133 aa20.72■□□□□ 0.91
VIPAS39-209ENST00000556909 Q6ZUG5 572 aa20.72■□□□□ 0.91
VIPAS39-209ENST00000556909 LINC01465Q8N7H1 131 aa20.72■□□□□ 0.91
VIPAS39-209ENST00000556909 RASGRP4Q8TDF6 673 aa20.72■□□□□ 0.91
VIPAS39-209ENST00000556909 FAM167AQ96KS9 214 aa20.72■□□□□ 0.91
VIPAS39-209ENST00000556909 MFSD14AQ96MC6 490 aa20.72■□□□□ 0.91
VIPAS39-209ENST00000556909 CDCA3Q99618 268 aaPredicted RBP20.72■□□□□ 0.91
VIPAS39-209ENST00000556909 FSD2A1L4K1 749 aa20.71■□□□□ 0.91
VIPAS39-209ENST00000556909 PRPF3O43395 683 aaKnown RBP20.71■□□□□ 0.91
VIPAS39-209ENST00000556909 GNA11P29992 359 aa20.71■□□□□ 0.91
VIPAS39-209ENST00000556909 CBX2Q14781 532 aaPredicted RBP20.71■□□□□ 0.91
VIPAS39-209ENST00000556909 CENPQQ7L2Z9 268 aaPredicted RBP20.71■□□□□ 0.91
VIPAS39-209ENST00000556909 KCNB2Q92953 911 aa20.71■□□□□ 0.91
VIPAS39-209ENST00000556909 BRF1Q92994 677 aa20.71■□□□□ 0.91
VIPAS39-209ENST00000556909 PHKBQ93100 1093 aa20.71■□□□□ 0.91
VIPAS39-209ENST00000556909 RNF19AQ9NV58 838 aa20.71■□□□□ 0.91
VIPAS39-209ENST00000556909 AKT3Q9Y243 479 aa20.71■□□□□ 0.91
VIPAS39-209ENST00000556909 ZDBF2Q9HCK1 2354 aa20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 WDR64B1ANS9 1081 aa20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 MAGEB2O15479 319 aa20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 NLRP11P59045 1033 aaKnown RBP20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 PLPP4Q5VZY2 271 aa20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 PDE12Q6L8Q7 609 aaKnown RBP20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 LRRC71Q8N4P6 559 aa20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 SUSD6Q92537 303 aa20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 JAKMIP1Q96N16 626 aaKnown RBP20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 CASD1Q96PB1 797 aa20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 MAP7D2Q96T17 732 aa20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 PHF7Q9BWX1 381 aaPredicted RBP20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 TMEM117Q9H0C3 514 aa20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 ADAMTS10Q9H324 1103 aa20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 LZTS1Q9Y250 596 aa20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 SAMM50Q9Y512 469 aa20.7■□□□□ 0.9
VIPAS39-209ENST00000556909 ZNF862O60290 1169 aa20.69■□□□□ 0.9
VIPAS39-209ENST00000556909 OATP04181 439 aa20.69■□□□□ 0.9
VIPAS39-209ENST00000556909 PLCB3Q01970 1234 aa20.69■□□□□ 0.9
VIPAS39-209ENST00000556909 PRKCEQ02156 737 aa20.69■□□□□ 0.9
VIPAS39-209ENST00000556909 EFCAB12Q6NXP0 572 aa20.69■□□□□ 0.9
VIPAS39-209ENST00000556909 LRRC55Q6ZSA7 311 aa20.69■□□□□ 0.9
VIPAS39-209ENST00000556909 LRRC43Q8N309 656 aa20.69■□□□□ 0.9
VIPAS39-209ENST00000556909 MRPS27Q92552 414 aaKnown RBP20.69■□□□□ 0.9
VIPAS39-209ENST00000556909 TMEM221A6NGB7 291 aa20.68■□□□□ 0.9
VIPAS39-209ENST00000556909 M0R296 226 aa20.68■□□□□ 0.9
VIPAS39-209ENST00000556909 HOXA2O43364 376 aa20.68■□□□□ 0.9
VIPAS39-209ENST00000556909 ATF7P17544 494 aaPredicted RBP20.68■□□□□ 0.9
VIPAS39-209ENST00000556909 EIF4BP23588 611 aaKnown RBP20.68■□□□□ 0.9
VIPAS39-209ENST00000556909 MRE11P49959 708 aa20.68■□□□□ 0.9
VIPAS39-209ENST00000556909 KCNC3Q14003 757 aa20.68■□□□□ 0.9
VIPAS39-209ENST00000556909 NTRK3Q16288 839 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms