RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 FRMD5Q7Z6J6 570 aa6.47□□□□□ -1.37
SCFD1-221ENST00000556534 PHYKPLQ8IUZ5 450 aa6.47□□□□□ -1.37
SCFD1-221ENST00000556534 BCL6BQ8N143 479 aaPredicted RBP6.47□□□□□ -1.37
SCFD1-221ENST00000556534 TUBGCP5Q96RT8 1024 aa6.47□□□□□ -1.37
SCFD1-221ENST00000556534 BARX1Q9HBU1 254 aaPredicted RBP6.47□□□□□ -1.37
SCFD1-221ENST00000556534 DUSP10Q9Y6W6 482 aa6.47□□□□□ -1.37
SCFD1-221ENST00000556534 LOC105371045A0A1W2PR82 267 aa6.46□□□□□ -1.38
SCFD1-221ENST00000556534 BRINP1O60477 761 aa6.46□□□□□ -1.38
SCFD1-221ENST00000556534 ZNF888P0CJ79 500 aaPredicted RBP6.46□□□□□ -1.38
SCFD1-221ENST00000556534 LSP1P33241 339 aa6.46□□□□□ -1.38
SCFD1-221ENST00000556534 STAT4Q14765 748 aa6.46□□□□□ -1.38
SCFD1-221ENST00000556534 EIF4HQ15056 248 aaKnown RBP6.46□□□□□ -1.38
SCFD1-221ENST00000556534 GRAMD4Q6IC98 578 aa6.46□□□□□ -1.38
SCFD1-221ENST00000556534 KANSL1Q7Z3B3 1105 aa6.46□□□□□ -1.38
SCFD1-221ENST00000556534 ZDHHC14Q8IZN3 488 aa6.46□□□□□ -1.38
SCFD1-221ENST00000556534 OR5AN1Q8NGI8 311 aa6.46□□□□□ -1.38
SCFD1-221ENST00000556534 MYL10Q9BUA6 226 aa6.46□□□□□ -1.38
SCFD1-221ENST00000556534 ADAM7Q9H2U9 754 aa6.46□□□□□ -1.38
SCFD1-221ENST00000556534 RTEL1Q9NZ71 1219 aa6.46□□□□□ -1.38
SCFD1-221ENST00000556534 USP36Q9P275 1121 aaKnown RBP6.46□□□□□ -1.38
SCFD1-221ENST00000556534 PTPN22Q9Y2R2 807 aa6.46□□□□□ -1.38
SCFD1-221ENST00000556534 A0A0G2JNJ9 132 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 HMGCRP04035 888 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 KCNQ1P51787 676 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 NFKB2Q00653 900 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 KIAA2012Q0VF49 1180 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 NOLC1Q14978 699 aaKnown RBP eCLIP6.45□□□□□ -1.38
SCFD1-221ENST00000556534 ZNF827Q17R98 1081 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 ZBTB41Q5SVQ8 909 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 BROXQ5VW32 411 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 BORAQ6PGQ7 559 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 OTOP2Q7RTS6 562 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 RALYLQ86SE5 291 aaKnown RBP6.45□□□□□ -1.38
SCFD1-221ENST00000556534 FAM124AQ86V42 546 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 KBTBD2Q8IY47 623 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 FAM177A1Q8N128 213 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-221ENST00000556534 LGI4Q8N135 537 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 CLRN3Q8NCR9 226 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 WDR48Q8TAF3 677 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 ZNF496Q96IT1 587 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-221ENST00000556534 TEPSINQ96N21 525 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 PITHD1Q9GZP4 211 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-221ENST00000556534 HAPLN2Q9GZV7 340 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 Q9UFV3 132 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 RAPGEFL1Q9UHV5 662 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 MSRAQ9UJ68 235 aa6.45□□□□□ -1.38
SCFD1-221ENST00000556534 ELL2O00472 640 aaPredicted RBP6.44□□□□□ -1.38
SCFD1-221ENST00000556534 GPR39O43194 453 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 KDM1AO60341 852 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 ULK1O75385 1050 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 PRPF6O94906 941 aaKnown RBP6.44□□□□□ -1.38
SCFD1-221ENST00000556534 CNR2P34972 360 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 ADCY2Q08462 1091 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 MAP3K12Q12852 859 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 USP10Q14694 798 aaKnown RBP6.44□□□□□ -1.38
SCFD1-221ENST00000556534 LCE1DQ5T752 114 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 TRIM68Q6AZZ1 485 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 KIAA1841Q6NSI8 718 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 UNQ6494/PRO21346Q6UXR6 183 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 LARP4Q71RC2 724 aaKnown RBP eCLIP6.44□□□□□ -1.38
SCFD1-221ENST00000556534 HDGFL2Q7Z4V5 671 aaPredicted RBP6.44□□□□□ -1.38
SCFD1-221ENST00000556534 IFNL2Q8IZJ0 200 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 KCMF1Q9P0J7 381 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 CDC42EP3Q9UKI2 254 aa6.44□□□□□ -1.38
SCFD1-221ENST00000556534 PRICKLE3O43900 615 aaPredicted RBP6.43□□□□□ -1.38
SCFD1-221ENST00000556534 STAT5BP51692 787 aa6.43□□□□□ -1.38
SCFD1-221ENST00000556534 BCAR1P56945 870 aa6.43□□□□□ -1.38
SCFD1-221ENST00000556534 TMPRSS15P98073 1019 aa6.43□□□□□ -1.38
SCFD1-221ENST00000556534 ZFYVE27Q5T4F4 411 aa6.43□□□□□ -1.38
SCFD1-221ENST00000556534 TIGD7Q6NT04 549 aaPredicted RBP6.43□□□□□ -1.38
SCFD1-221ENST00000556534 ESPNLQ6ZVH7 1005 aa6.43□□□□□ -1.38
SCFD1-221ENST00000556534 CXorf67Q86X51 503 aaPredicted RBP6.43□□□□□ -1.38
SCFD1-221ENST00000556534 C20orf173Q96LM9 149 aa6.43□□□□□ -1.38
SCFD1-221ENST00000556534 CARD11Q9BXL7 1154 aa6.43□□□□□ -1.38
SCFD1-221ENST00000556534 KIAA1683Q9H0B3 1180 aa6.43□□□□□ -1.38
SCFD1-221ENST00000556534 INVSQ9Y283 1065 aa6.43□□□□□ -1.38
SCFD1-221ENST00000556534 SLC4A7Q9Y6M7 1214 aa6.43□□□□□ -1.38
SCFD1-221ENST00000556534 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-221ENST00000556534 APOL3O95236 402 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 CNOT4O95628 575 aaKnown RBP6.42□□□□□ -1.38
SCFD1-221ENST00000556534 CPEP16870 476 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 RRADP55042 308 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 MANFP55145 182 aaKnown RBP6.42□□□□□ -1.38
SCFD1-221ENST00000556534 SESN3P58005 492 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 AMPD3Q01432 767 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 BMP8AQ7Z5Y6 402 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 PLEKHH3Q7Z736 793 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 FERMT3Q86UX7 667 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 RASSF3Q86WH2 238 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 DDX42Q86XP3 938 aaKnown RBP eCLIP6.42□□□□□ -1.38
SCFD1-221ENST00000556534 SPATS2Q86XZ4 545 aaKnown RBP6.42□□□□□ -1.38
SCFD1-221ENST00000556534 RPGRQ92834 1020 aaKnown RBP6.42□□□□□ -1.38
SCFD1-221ENST00000556534 MTG2Q9H4K7 406 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 TOPORSQ9NS56 1045 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-221ENST00000556534 DENND2AQ9ULE3 1009 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 ZDHHC9Q9Y397 364 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 PPP2R3BQ9Y5P8 575 aa6.42□□□□□ -1.38
SCFD1-221ENST00000556534 A0A0A6YYJ9 748 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 OPHN1O60890 802 aa6.41□□□□□ -1.38
SCFD1-221ENST00000556534 CANXP27824 592 aaKnown RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms