RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 NLRP12P59046 1061 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 GIT2Q14161 759 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 XKR3Q5GH77 459 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 FAM160B1Q5W0V3 765 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 PADI6Q6TGC4 694 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 ATP8B4Q8TF62 1192 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 CCDC34Q96HJ3 373 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 ZNF668Q96K58 619 aaPredicted RBP11.96□□□□□ -0.49
TDP1-211ENST00000555178 CEP170P1Q96L14 293 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 PDLIM7Q9NR12 457 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 MAPK8IP1Q9UQF2 711 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 CD44P16070 742 aaKnown RBP11.96□□□□□ -0.49
TDP1-211ENST00000555178 CPT1AP50416 773 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 MFSD10Q14728 455 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 BSNDQ8WZ55 320 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 ARMC5Q96C12 935 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 NIFKQ9BYG3 293 aaKnown RBP11.96□□□□□ -0.49
TDP1-211ENST00000555178 ERAP1Q9NZ08 941 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 HDAC6Q9UBN7 1215 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 DBR1Q9UK59 544 aaKnown RBP11.96□□□□□ -0.49
TDP1-211ENST00000555178 TRPC6Q9Y210 931 aa11.96□□□□□ -0.49
TDP1-211ENST00000555178 SIP14410 1827 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 ARHGEF35A5YM69 484 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 SMIM10L2AP0DMW4 78 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 SMIM10L2BP0DMW5 78 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 MUTP22033 750 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 ACLYP53396 1101 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 NBPF20Q3BBV1 942 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 LRRC71Q8N4P6 559 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 DIS3LQ8TF46 1054 aaKnown RBP11.95□□□□□ -0.5
TDP1-211ENST00000555178 TMEM143Q96AN5 459 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 GSDMAQ96QA5 445 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 IKZF4Q9H2S9 585 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 ZHX3Q9H4I2 956 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 ANKEF1Q9NU02 776 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 TBC1D7Q9P0N9 293 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 FSD2A1L4K1 749 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 KRT18P05783 430 aaKnown RBP11.95□□□□□ -0.5
TDP1-211ENST00000555178 AMPD3Q01432 767 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 STK4Q13043 487 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 COASYQ13057 564 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 LUZP1Q86V48 1076 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 KSR1Q8IVT5 923 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 KIAA0895Q8NCT3 520 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 LMBR1Q8WVP7 490 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 WNT8BQ93098 351 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 CTAGE1Q96RT6 745 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 CBX8Q9HC52 389 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 PRDM10Q9NQV6 1147 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 ANO10Q9NW15 660 aa11.95□□□□□ -0.5
TDP1-211ENST00000555178 HIP1RO75146 1068 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 CST5P28325 142 aaPredicted RBP11.94□□□□□ -0.5
TDP1-211ENST00000555178 RUFY4Q6ZNE9 571 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 UNC13DQ70J99 1090 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 BBXQ8WY36 941 aaPredicted RBP11.94□□□□□ -0.5
TDP1-211ENST00000555178 SLC39A2Q9NP94 309 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 EXOC1Q9NV70 894 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 TREHO43280 583 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 RHOBTB3O94955 611 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 C22orf31O95567 290 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 MYL1P05976 194 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 XRCC6P12956 609 aaKnown RBP eCLIP11.94□□□□□ -0.5
TDP1-211ENST00000555178 KLRC1P26715 233 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 ZNF165P49910 485 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 CLCN3P51790 818 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 CASP5P51878 434 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 EHHADHQ08426 723 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 GRIK4Q16099 956 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 KLHL10Q6JEL2 608 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 U2AF1L4Q8WU68 220 aaKnown RBP11.94□□□□□ -0.5
TDP1-211ENST00000555178 MED15Q96RN5 788 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 PPP1R16BQ96T49 567 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 DHX33Q9H6R0 707 aaKnown RBP11.94□□□□□ -0.5
TDP1-211ENST00000555178 PANK4Q9NVE7 773 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 OGDHLQ9ULD0 1010 aa11.94□□□□□ -0.5
TDP1-211ENST00000555178 A0A1W2PQ45 241 aaPredicted RBP11.93□□□□□ -0.5
TDP1-211ENST00000555178 A0A1W2PQY0 241 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 GOLGA6L3A6NEY3 463 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 HBP1O60381 514 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 ADAM17P78536 824 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 PPFIA1Q13136 1202 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 KCNB1Q14721 858 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 EMC2Q15006 297 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 GDF6Q6KF10 455 aaPredicted RBP11.93□□□□□ -0.5
TDP1-211ENST00000555178 CNNM4Q6P4Q7 775 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 SFR1Q86XK3 245 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 ASAP3Q8TDY4 903 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 CCDC43Q96MW1 224 aaKnown RBP11.93□□□□□ -0.5
TDP1-211ENST00000555178 FIZ1Q96SL8 496 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 MTG1Q9BT17 334 aaPredicted RBP11.93□□□□□ -0.5
TDP1-211ENST00000555178 KIFC3Q9BVG8 833 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 SUGCTQ9HAC7 445 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 NRBP2Q9NSY0 501 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 USP20Q9Y2K6 914 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 ALPK3Q96L96 1907 aa11.93□□□□□ -0.5
TDP1-211ENST00000555178 FRMD3A2A2Y4 597 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 PPP1R3GB7ZBB8 358 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 SGPL1O95470 568 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 PRCPP42785 496 aa11.92□□□□□ -0.5
TDP1-211ENST00000555178 PKN2Q16513 984 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms