RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ZNF112Q9UJU3 913 aa10.8□□□□□ -0.68
SS18-205ENST00000542420 PPP1R9AQ9ULJ8 1098 aa10.8□□□□□ -0.68
SS18-205ENST00000542420 ZBED4O75132 1171 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 FLOT1O75955 427 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 CYP2C19P33261 490 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 CACNB1Q02641 598 aaPredicted RBP10.79□□□□□ -0.68
SS18-205ENST00000542420 CYP4A11Q02928 519 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 CTTNQ14247 550 aaKnown RBP10.79□□□□□ -0.68
SS18-205ENST00000542420 MIER3Q7Z3K6 550 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 IRF2BP2Q7Z5L9 587 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 CREG2Q8IUH2 290 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 FAM178BQ8IXR5 827 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 C4orf19Q8IY42 314 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 FAM186BQ8IYM0 893 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 ZBTB9Q96C00 473 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 PNKPQ96T60 521 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 LXNQ9BS40 222 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 ZNF341Q9BYN7 854 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 AGO4Q9HCK5 861 aaKnown RBP10.79□□□□□ -0.68
SS18-205ENST00000542420 ANKEF1Q9NU02 776 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 GEMIN8Q9NWZ8 242 aaKnown RBP10.79□□□□□ -0.68
SS18-205ENST00000542420 PSD3Q9NYI0 1048 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 RGS17Q9UGC6 210 aaPredicted RBP10.79□□□□□ -0.68
SS18-205ENST00000542420 FRMD4BQ9Y2L6 1034 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 PPP2R3BQ9Y5P8 575 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 MYPNQ86TC9 1320 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 KIAA1217Q5T5P2 1943 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 WDR90Q96KV7 1748 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 MACROD2A1Z1Q3 448 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 STAM2O75886 525 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 ARP10275 920 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 BRD2P25440 801 aaKnown RBP10.79□□□□□ -0.68
SS18-205ENST00000542420 PAFAH1B1P43034 410 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 KRT76Q01546 638 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 RAPGEF1Q13905 1077 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 SMC1AQ14683 1233 aaKnown RBP10.79□□□□□ -0.68
SS18-205ENST00000542420 CAGE1Q8TC20 777 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.79□□□□□ -0.686e-8■■■■□ 26.7
SS18-205ENST00000542420 SPAG5Q96R06 1193 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 OSBPL9Q96SU4 736 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 MMS19Q96T76 1030 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 EFCC1Q9HA90 598 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 MED4Q9NPJ6 270 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 KCNG1Q9UIX4 513 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 ZBTB12Q9Y330 459 aaPredicted RBP10.79□□□□□ -0.68
SS18-205ENST00000542420 CAPN6Q9Y6Q1 641 aa10.79□□□□□ -0.68
SS18-205ENST00000542420 SIP14410 1827 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 A0A0G2JMZ2 1700 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 ERICH4A6NGS2 130 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 RSPH10B2B2RC85 870 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 ATP2A1O14983 1001 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 DHX15O43143 795 aaKnown RBP10.78□□□□□ -0.68
SS18-205ENST00000542420 SASH3O75995 380 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 RSPH10BP0C881 870 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 INPP5BP32019 993 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 STAT1P42224 750 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 EIF1ADQ8N9N8 165 aaKnown RBP10.78□□□□□ -0.68
SS18-205ENST00000542420 NOA1Q8NC60 698 aaKnown RBP10.78□□□□□ -0.68
SS18-205ENST00000542420 SYTL5Q8TDW5 730 aaPredicted RBP10.78□□□□□ -0.68
SS18-205ENST00000542420 LMBR1Q8WVP7 490 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 TBC1D5Q92609 795 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 DRC1Q96MC2 740 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 C17orf75Q9HAS0 396 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 SIX2Q9NPC8 291 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 NLRC4Q9NPP4 1024 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 ST7Q9NRC1 585 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 AGPAT3Q9NRZ7 376 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 TCEAL9Q9UHQ7 104 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 SEC31AO94979 1220 aaKnown RBP10.78□□□□□ -0.68
SS18-205ENST00000542420 ITGB5P18084 799 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 NOP2P46087 812 aaKnown RBP10.78□□□□□ -0.68
SS18-205ENST00000542420 QARSP47897 775 aaKnown RBP10.78□□□□□ -0.68
SS18-205ENST00000542420 AARSP49588 968 aaKnown RBP eCLIP10.78□□□□□ -0.68
SS18-205ENST00000542420 HNRNPH2P55795 449 aaKnown RBP10.78□□□□□ -0.68
SS18-205ENST00000542420 VSNL1P62760 191 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 GFPT1Q06210 699 aaPredicted RBP10.78□□□□□ -0.68
SS18-205ENST00000542420 RAD51AP2Q09MP3 1159 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 MAPK7Q13164 816 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 POTEAQ6S8J7 498 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 CCDC125Q86Z20 511 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 APOBEC3FQ8IUX4 373 aaKnown RBP10.78□□□□□ -0.68
SS18-205ENST00000542420 GPRASP2Q96D09 838 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 ACCSQ96QU6 501 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 STK33Q9BYT3 514 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 ABCB6Q9NP58 842 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 KCNH7Q9NS40 1196 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 EP400Q96L91 3159 aa10.78□□□□□ -0.68
SS18-205ENST00000542420 C19orf81C9J6K1 198 aa10.77□□□□□ -0.69
SS18-205ENST00000542420 TULP1O00294 542 aaPredicted RBP10.77□□□□□ -0.69
SS18-205ENST00000542420 ENC1O14682 589 aa10.77□□□□□ -0.69
SS18-205ENST00000542420 MOCS3O95396 460 aa10.77□□□□□ -0.69
SS18-205ENST00000542420 POLD1P28340 1107 aa10.77□□□□□ -0.69
SS18-205ENST00000542420 FMO5P49326 533 aa10.77□□□□□ -0.69
SS18-205ENST00000542420 NNTQ13423 1086 aa10.77□□□□□ -0.69
SS18-205ENST00000542420 TCEAL1Q15170 157 aa10.77□□□□□ -0.69
SS18-205ENST00000542420 CFAP221Q4G0U5 840 aa10.77□□□□□ -0.69
SS18-205ENST00000542420 ODR4Q5SWX8 454 aa10.77□□□□□ -0.69
SS18-205ENST00000542420 ZNF746Q6NUN9 644 aaPredicted RBP10.77□□□□□ -0.69
SS18-205ENST00000542420 INTS8Q75QN2 995 aaKnown RBP10.77□□□□□ -0.69
SS18-205ENST00000542420 PBKQ96KB5 322 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms