RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 LRRC41Q15345 812 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 TARBP2Q15633 366 aaKnown RBP19.6■□□□□ 0.73
CLIP1-215ENST00000541108 BMT2Q1RMZ1 405 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 CDKAL1Q5VV42 579 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 ZNF720Q7Z2F6 126 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 EXOC8Q8IYI6 725 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 ZNF507Q8TCN5 953 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 ATP8B4Q8TF62 1192 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 FIZ1Q96SL8 496 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 SEMA6BQ9H3T3 888 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 DHX33Q9H6R0 707 aaKnown RBP19.6■□□□□ 0.73
CLIP1-215ENST00000541108 SAMSN1Q9NSI8 373 aaKnown RBP19.6■□□□□ 0.73
CLIP1-215ENST00000541108 ERAP1Q9NZ08 941 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 THSD7BQ9C0I4 1608 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 GNRH1P01148 92 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 RFC5P40937 340 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 MTERF2Q49AM1 385 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 PRAMEF19Q5SWL8 479 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 GJC2Q5T442 439 aaPredicted RBP19.59■□□□□ 0.73
CLIP1-215ENST00000541108 ANKRD40Q6AI12 368 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 GLIS3Q8NEA6 775 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 AFG1LQ8WV93 481 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 MRFAP1L1Q96HT8 127 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 CEP89Q96ST8 783 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 FGFBP2Q9BYJ0 223 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 THAP9Q9H5L6 903 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 ATP6V0A4Q9HBG4 840 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 POLD4Q9HCU8 107 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 SAGE1Q9NXZ1 904 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 FAM184BQ9ULE4 1060 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 CASP8AP2Q9UKL3 1982 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 UBE4BO95155 1302 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 TRIM49BA6NDI0 452 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 ATP1A3P13637 1013 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 SPAG1Q07617 926 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 ALCAMQ13740 583 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 MFSD14CQ5VZR4 134 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 PPP4R3CPQ6ZMV5 832 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 OR6J1Q8NGC5 347 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 SLC7A3Q8WY07 619 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 TSG101Q99816 390 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 NTPCRQ9BSD7 190 aaKnown RBP19.59■□□□□ 0.73
CLIP1-215ENST00000541108 ST6GALNAC4Q9H4F1 302 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 GABRQQ9UN88 632 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 PCDHB13Q9Y5F0 798 aa19.59■□□□□ 0.73
CLIP1-215ENST00000541108 HBP1O60381 514 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 GCNT3O95395 438 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 FGFR1OPO95684 399 aaKnown RBP19.58■□□□□ 0.72
CLIP1-215ENST00000541108 LGALS2P05162 132 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 ZNF75DP51815 510 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 CASP5P51878 434 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 POLGP54098 1239 aaPredicted RBP19.58■□□□□ 0.72
CLIP1-215ENST00000541108 FANCCQ00597 558 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 PRKCZQ05513 592 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 PLCB4Q15147 1175 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 DGKDQ16760 1214 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 KNOP1Q1ED39 458 aaKnown RBP19.58■□□□□ 0.72
CLIP1-215ENST00000541108 FAM102BQ5T8I3 360 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 MAEAQ7L5Y9 396 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.58■□□□□ 0.72
CLIP1-215ENST00000541108 CSGALNACT2Q8N6G5 542 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 CTAGE1Q96RT6 745 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 DUSP9Q99956 384 aaKnown RBP19.58■□□□□ 0.72
CLIP1-215ENST00000541108 STRA6Q9BX79 667 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 KCTD10Q9H3F6 313 aa19.58■□□□□ 0.72
CLIP1-215ENST00000541108 LRRC10BA6NIK2 292 aa19.57■□□□□ 0.72
CLIP1-215ENST00000541108 A6NJR5 290 aa19.57■□□□□ 0.72
CLIP1-215ENST00000541108 GPR25O00155 361 aa19.57■□□□□ 0.72
CLIP1-215ENST00000541108 ADCY6O43306 1168 aa19.57■□□□□ 0.72
CLIP1-215ENST00000541108 SERPINC1P01008 464 aa19.57■□□□□ 0.72
CLIP1-215ENST00000541108 HTRA3P83110 453 aa19.57■□□□□ 0.72
CLIP1-215ENST00000541108 ZCWPW2Q504Y3 356 aa19.57■□□□□ 0.72
CLIP1-215ENST00000541108 SRRTQ9BXP5 876 aaKnown RBP19.57■□□□□ 0.72
CLIP1-215ENST00000541108 XPNPEP1Q9NQW7 623 aa19.57■□□□□ 0.72
CLIP1-215ENST00000541108 TRAF3IP3Q9Y228 551 aa19.57■□□□□ 0.72
CLIP1-215ENST00000541108 PDXKO00764 312 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 CBFA2T2O43439 604 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 GAS2O43903 313 aaKnown RBP19.56■□□□□ 0.72
CLIP1-215ENST00000541108 MAFO75444 373 aaPredicted RBP19.56■□□□□ 0.72
CLIP1-215ENST00000541108 MMP3P08254 477 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 AKR1A1P14550 325 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 SMTNP53814 917 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 FKBP3Q00688 224 aaKnown RBP19.56■□□□□ 0.72
CLIP1-215ENST00000541108 EMC2Q15006 297 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 ARHGEF6Q15052 776 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 EDRF1Q3B7T1 1238 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 TRIM50Q86XT4 487 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 SPIRE2Q8WWL2 714 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 TRIB2Q92519 343 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 JPH2Q9BR39 696 aaPredicted RBP19.56■□□□□ 0.72
CLIP1-215ENST00000541108 C16orf70Q9BSU1 422 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 SRRDQ9UH36 339 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 ZNF215Q9UL58 517 aaPredicted RBP19.56■□□□□ 0.72
CLIP1-215ENST00000541108 ZSWIM8A7E2V4 1837 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 DYNC1LI2O43237 492 aaPredicted RBP19.56■□□□□ 0.72
CLIP1-215ENST00000541108 PPP1R37O75864 691 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 MYBP10242 640 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 SCP2P22307 547 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 PTGS1P23219 599 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 EEF1GP26641 437 aaKnown RBP19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms