RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 FAM173BQ6P4H8 233 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 CCDC82Q8N4S0 544 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 GMCL1P1Q8NEA9 526 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 CAGE1Q8TC20 777 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 TOP1MTQ969P6 601 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 PGBD1Q96JS3 809 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 TEX13BQ9BXU2 312 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 S1PR5Q9H228 398 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 RIOX1Q9H6W3 641 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 ARHGEF10LQ9HCE6 1279 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 MAD2L2Q9UI95 211 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 SRPRBQ9Y5M8 271 aaKnown RBP9.42□□□□□ -0.9
CHD4-208ENST00000540960 LCTP09848 1927 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 BPTFQ12830 3046 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 DSPP15924 2871 aaKnown RBP9.41□□□□□ -0.9
CHD4-208ENST00000540960 PNMA6FA0A0J9YX94 578 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 C1QTNF9BB2RNN3 333 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 C2CD4DB7Z1M9 353 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 PER2O15055 1255 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 NMT2O60551 498 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 C1QTNF9P0C862 333 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 SP9P0CG40 484 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 ZNF543Q08ER8 600 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 STX1AQ16623 288 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 VARS2Q5ST30 1063 aaKnown RBP9.41□□□□□ -0.9
CHD4-208ENST00000540960 FAM83BQ5T0W9 1011 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 ZNF618Q5T7W0 954 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 FAM200AQ8TCP9 573 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 GMCL1Q96IK5 515 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 NUP88Q99567 741 aaPredicted RBP9.41□□□□□ -0.9
CHD4-208ENST00000540960 C11orf84Q9BUA3 381 aaPredicted RBP9.41□□□□□ -0.9
CHD4-208ENST00000540960 ZMYND12Q9H0C1 365 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 RAVER2Q9HCJ3 691 aaKnown RBP9.41□□□□□ -0.9
CHD4-208ENST00000540960 GOPCQ9HD26 462 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 VPS54Q9P1Q0 977 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 CLIP2Q9UDT6 1046 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 PLAGL2Q9UPG8 496 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 CLIC4Q9Y696 253 aa9.41□□□□□ -0.9
CHD4-208ENST00000540960 KIAA1671Q9BY89 1806 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.4□□□□□ -0.9
CHD4-208ENST00000540960 GOLGA6L6A8MZA4 724 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 PRR5-ARHGAP8B1AHC4 643 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 GOLGA6L19H0YKK7 550 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 SMC2O95347 1197 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 RB1P06400 928 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 PDHBP11177 359 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 LIG1P18858 919 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 PMLP29590 882 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 NAPAP54920 295 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 ARHGAP8P85298 464 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 ICA1Q05084 483 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 PTPN11Q06124 597 aaPredicted RBP9.4□□□□□ -0.9
CHD4-208ENST00000540960 PTPAQ15257 358 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 DUSP28Q4G0W2 176 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 TTC38Q5R3I4 469 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 RESP18Q5W5W9 173 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.4□□□□□ -0.9
CHD4-208ENST00000540960 HEATR3Q7Z4Q2 680 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 CEP57L1Q8IYX8 460 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 FMR1NBQ8N0W7 255 aaPredicted RBP9.4□□□□□ -0.9
CHD4-208ENST00000540960 FIBCD1Q8N539 461 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 PURBQ96QR8 312 aaKnown RBP9.4□□□□□ -0.9
CHD4-208ENST00000540960 PPP1R9BQ96SB3 815 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 RAB34Q9BZG1 259 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 NCDNQ9UBB6 729 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 KCNJ14Q9UNX9 436 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 STK24Q9Y6E0 443 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 MYH8P13535 1937 aa9.4□□□□□ -0.9
CHD4-208ENST00000540960 PLXNA4Q9HCM2 1894 aa9.4□□□□□ -0.91
CHD4-208ENST00000540960 SMTNL1A8MU46 457 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 SLC26A4O43511 780 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 NR1I2O75469 434 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 ZNF202O95125 648 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 AKR1B1P15121 316 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 LONP1P36776 959 aaKnown RBP9.39□□□□□ -0.91
CHD4-208ENST00000540960 PRPHP41219 470 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 SLC1A4P43007 532 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 TYRO3Q06418 890 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 RBL2Q08999 1139 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 NONOQ15233 471 aaKnown RBP eCLIP9.39□□□□□ -0.91
CHD4-208ENST00000540960 CCDC96Q2M329 555 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 TRIM71Q2Q1W2 868 aaKnown RBP9.39□□□□□ -0.91
CHD4-208ENST00000540960 AXDND1Q5T1B0 1012 aaPredicted RBP9.39□□□□□ -0.91
CHD4-208ENST00000540960 GAS2L3Q86XJ1 694 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 CCDC155Q8N6L0 562 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 TRIML1Q8N9V2 468 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 ENGASEQ8NFI3 743 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 ATP8B4Q8TF62 1192 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 CHURC1Q8WUH1 139 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 AK8Q96MA6 479 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 AIFM3Q96NN9 605 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 MAGEF1Q9HAY2 307 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 ERVK-5Q9HDB9 667 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 PARD6AQ9NPB6 346 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 HOMER2Q9NSB8 354 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 LIMD1Q9UGP4 676 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 KCNH3Q9ULD8 1083 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 LHX6Q9UPM6 363 aa9.39□□□□□ -0.91
CHD4-208ENST00000540960 SMCO2A6NFE2 343 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 ASB14A6NK59 587 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms