RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 POTEGQ6S5H5 508 aa19.5■□□□□ 0.71
CLSTN3-210ENST00000540931 CLIC6Q96NY7 704 aa19.5■□□□□ 0.71
CLSTN3-210ENST00000540931 DHX33Q9H6R0 707 aaKnown RBP19.5■□□□□ 0.71
CLSTN3-210ENST00000540931 ATP6V0A4Q9HBG4 840 aa19.5■□□□□ 0.71
CLSTN3-210ENST00000540931 BMP2KQ9NSY1 1161 aaPredicted RBP19.5■□□□□ 0.71
CLSTN3-210ENST00000540931 IGKV6-21A0A0C4DH24 114 aa19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 TREHO43280 583 aa19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 C22orf31O95567 290 aa19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 RFC2P35250 354 aa19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 MXD4Q14582 209 aaPredicted RBP19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 ZRSR1Q15695 479 aaKnown RBP19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 MARCH8Q5T0T0 291 aa19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 GPR153Q6NV75 609 aa19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 EPSTI1Q96J88 318 aa19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 MTRQ99707 1265 aa19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 TRPV6Q9H1D0 765 aa19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 TRMT13Q9NUP7 481 aaKnown RBP19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 WRAP73Q9P2S5 460 aaPredicted RBP19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 SQORQ9Y6N5 450 aa19.49■□□□□ 0.71
CLSTN3-210ENST00000540931 PP2D1A8MPX8 630 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 ZBTB42B2RXF5 422 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 RAG1P15918 1043 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 SCP2P22307 547 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 CDC25AP30304 524 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 STAT6P42226 847 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 GRB10Q13322 594 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 EFCAB12Q6NXP0 572 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 TRMT1LQ7Z2T5 733 aaKnown RBP19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 C7orf61Q8IZ16 206 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 METTL13Q8N6R0 699 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 SYT2Q8N9I0 419 aaPredicted RBP19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 USP38Q8NB14 1042 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 TMEM87AQ8NBN3 555 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 PIGOQ8TEQ8 1089 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 LARP4BQ92615 738 aaKnown RBP19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 BHMT2Q9H2M3 363 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 HIPK3Q9H422 1215 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 C17orf75Q9HAS0 396 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 TBX21Q9UL17 535 aa19.48■□□□□ 0.71
CLSTN3-210ENST00000540931 TIMP1P01033 207 aa19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 CYP11B2P19099 503 aa19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 ABCD1P33897 745 aa19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 GRIN1Q05586 938 aa19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 KARSQ15046 597 aaKnown RBP19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 PADI6Q6TGC4 694 aa19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 SV2BQ7L1I2 683 aa19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 TMEM199Q8N511 208 aa19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 PSPC1Q8WXF1 523 aaKnown RBP19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 MRPS27Q92552 414 aaKnown RBP19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 KIFAP3Q92845 792 aa19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 INO80BQ9C086 356 aaPredicted RBP19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 PDLIM7Q9NR12 457 aa19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 KCNH3Q9ULD8 1083 aa19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 ZMYND8Q9ULU4 1186 aaPredicted RBP19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 PHLPP2Q6ZVD8 1323 aa19.47■□□□□ 0.71
CLSTN3-210ENST00000540931 FAM237AA0A1B0GTK4 181 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 MYL1P05976 194 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 PFKMP08237 780 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 PLA2G4BP0C869 781 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 SELPP16109 830 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 PLCG1P19174 1290 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 POU5F1BQ06416 359 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 TFDP1Q14186 410 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 EMC2Q15006 297 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 PPP2R5AQ15172 486 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 PCBP1Q15365 356 aaKnown RBP eCLIP19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 KANK3Q6NY19 840 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 SHC4Q6S5L8 630 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 CEP57L1Q8IYX8 460 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 RPUSD2Q8IZ73 545 aaKnown RBP19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 RAD54LQ92698 747 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 DRC1Q96MC2 740 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 PNMA5Q96PV4 448 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 CEP89Q96ST8 783 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 LBHD1Q9BQE6 289 aaPredicted RBP19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 SUGCTQ9HAC7 445 aa19.46■□□□□ 0.71
CLSTN3-210ENST00000540931 TCHHQ07283 1943 aa19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 GUCY2CP25092 1073 aa19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 THPOP40225 353 aa19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 NPEPPSP55786 919 aa19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 FAM26DQ5JW98 314 aa19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 PLA2G4FQ68DD2 849 aa19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 ZNF410Q86VK4 478 aa19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 NOC4LQ9BVI4 516 aaKnown RBP19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 TNMDQ9H2S6 317 aa19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 PRDM5Q9NQX1 630 aaPredicted RBP19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 HOOK1Q9UJC3 728 aaKnown RBP19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 ODF2LQ9ULJ1 636 aa19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 AKT3Q9Y243 479 aa19.45■□□□□ 0.7
CLSTN3-210ENST00000540931 RSPH10B2B2RC85 870 aa19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 E9PMD0 336 aa19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 RSPH10BP0C881 870 aa19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 CKBP12277 381 aa19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 ECM1Q16610 540 aa19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 LRIT3Q3SXY7 679 aa19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 SPECC1Q5M775 1068 aa19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 MFSD5Q6N075 450 aa19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 KIAA0319LQ8IZA0 1049 aa19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 DEFB123Q8N688 67 aa19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 LINC01465Q8N7H1 131 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms