RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 A0A1W2PQ45 241 aaPredicted RBP11.74□□□□□ -0.53
VPS33A-204ENST00000540669 A0A1W2PQY0 241 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 TRAK2O60296 914 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 DGAT1O75907 488 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 SGPL1O95470 568 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 INSRRP14616 1297 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 RFC5P40937 340 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 PTPN11Q06124 597 aaPredicted RBP11.74□□□□□ -0.53
VPS33A-204ENST00000540669 CUL4BQ13620 913 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 KIAA0753Q2KHM9 967 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 ZNF484Q5JVG2 852 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 CCDC183Q5T5S1 534 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 UTP14CQ5TAP6 766 aaKnown RBP11.74□□□□□ -0.53
VPS33A-204ENST00000540669 NFRKBQ6P4R8 1299 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 PADI6Q6TGC4 694 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 CXCL17Q6UXB2 119 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 GPBP1Q86WP2 473 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 GRAMD1CQ8IYS0 662 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 CNNM3Q8NE01 707 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 GLG1Q92896 1179 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 PLIN2Q99541 437 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 REEP2Q9BRK0 252 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 FUCA2Q9BTY2 467 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 HTATIP2Q9BUP3 242 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 PANK2Q9BZ23 570 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 NUP62CLQ9H1M0 184 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 SEPT9Q9UHD8 586 aaPredicted RBP11.74□□□□□ -0.53
VPS33A-204ENST00000540669 GTF2IRD1Q9UHL9 959 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 ODF2LQ9ULJ1 636 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 NRCAMQ92823 1304 aa11.74□□□□□ -0.53
VPS33A-204ENST00000540669 A0A087WWV3 80 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 GAS2O43903 313 aaKnown RBP11.73□□□□□ -0.53
VPS33A-204ENST00000540669 PPP1R37O75864 691 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 SMIM10L2AP0DMW4 78 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 SMIM10L2BP0DMW5 78 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 MARK3P27448 753 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 CDK7P50613 346 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 RBL2Q08999 1139 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 GIT2Q14161 759 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 KCNB1Q14721 858 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 EMC2Q15006 297 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 GRIK4Q16099 956 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 C1orf53Q5VUE5 145 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 SV2BQ7L1I2 683 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 OTUD6AQ7L8S5 288 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 RPAINQ86UA6 219 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 CEP57L1Q8IYX8 460 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 ARRDC4Q8NCT1 418 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 DDX12PQ92771 950 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 STRA6Q9BX79 667 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 SEZ6LQ9BYH1 1024 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 OLFML3Q9NRN5 406 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 PCDHA2Q9Y5H9 948 aa11.73□□□□□ -0.53
VPS33A-204ENST00000540669 PVALEFA0A1B0GWK0 134 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 ARHGEF35A5YM69 484 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 ZEB2O60315 1214 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 RHOBTB3O94955 611 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 MYL3P08590 195 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 BMP6P22004 513 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 CASP1P29466 404 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 ARL2P36404 184 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 PPFIA1Q13136 1202 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 PNOCQ13519 176 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 COBLL1Q53SF7 1204 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 XKR9Q5GH70 373 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 UNC13DQ70J99 1090 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 SERINC5Q86VE9 423 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 PIP4P2Q8N4L2 257 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 MCPH1Q8NEM0 835 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 TRAPPC12Q8WVT3 735 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 CEP170P1Q96L14 293 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 SH2D3AQ9BRG2 576 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 LRRC27Q9C0I9 530 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 ST6GALNAC4Q9H4F1 302 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 NRBP2Q9NSY0 501 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 KIAA1468Q9P260 1216 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 PCDHA5Q9Y5H7 936 aa11.72□□□□□ -0.53
VPS33A-204ENST00000540669 ADGRA3Q8IWK6 1321 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 RRN3P2A6NIE6 340 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 RSPH10B2B2RC85 870 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 KBTBD13C9JR72 458 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 USO1O60763 962 aaKnown RBP11.71□□□□□ -0.53
VPS33A-204ENST00000540669 RSPH10BP0C881 870 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 RGS19P49795 217 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 DRP2Q13474 957 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 MORC3Q14149 939 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 ZRSR1Q15695 479 aaKnown RBP11.71□□□□□ -0.53
VPS33A-204ENST00000540669 TRIM71Q2Q1W2 868 aaKnown RBP11.71□□□□□ -0.53
VPS33A-204ENST00000540669 NBPF20Q3BBV1 942 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 MTERF2Q49AM1 385 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 CAVIN1Q6NZI2 390 aaKnown RBP11.71□□□□□ -0.53
VPS33A-204ENST00000540669 MTHFD1LQ6UB35 978 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 EPM2AIP1Q7L775 607 aaPredicted RBP11.71□□□□□ -0.53
VPS33A-204ENST00000540669 RASSF8Q8NHQ8 419 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 BSNDQ8WZ55 320 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 STAMQ92783 540 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 GSDMAQ96QA5 445 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 NTPCRQ9BSD7 190 aaKnown RBP11.71□□□□□ -0.53
VPS33A-204ENST00000540669 C17orf75Q9HAS0 396 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 ATP6V0A4Q9HBG4 840 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms