RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SH2D3AQ9BRG2 576 aa16.82■□□□□ 0.28
CPSF1-208ENST00000532560 POLR3CQ9BUI4 534 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-208ENST00000532560 TUFT1Q9NNX1 390 aa16.82■□□□□ 0.28
CPSF1-208ENST00000532560 AKT3Q9Y243 479 aa16.82■□□□□ 0.28
CPSF1-208ENST00000532560 GPR32O75388 356 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 VTNP04004 478 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 SPATA31C1P0DKV0 1188 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 RFC5P40937 340 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 NPEPPSP55786 919 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 DEFB103AP81534 67 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 HAUS3Q68CZ6 603 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 FAM43BQ6ZT52 329 aaPredicted RBP16.81■□□□□ 0.28
CPSF1-208ENST00000532560 FERMT3Q86UX7 667 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 HERC6Q8IVU3 1022 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 IGSF22Q8N9C0 903 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 SLC7A3Q8WY07 619 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 RAB34Q9BZG1 259 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 DHX33Q9H6R0 707 aaKnown RBP16.81■□□□□ 0.28
CPSF1-208ENST00000532560 AGO3Q9H9G7 860 aaKnown RBP16.81■□□□□ 0.28
CPSF1-208ENST00000532560 SUGCTQ9HAC7 445 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 ANKEF1Q9NU02 776 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 PCDHA11Q9Y5I1 949 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 GBF1Q92538 1859 aa16.81■□□□□ 0.28
CPSF1-208ENST00000532560 LOXHD1Q8IVV2 1947 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 RBAK-RBAKDNI3L0D1 243 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 STX6O43752 255 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 GAS2O43903 313 aaKnown RBP16.8■□□□□ 0.28
CPSF1-208ENST00000532560 MED24O75448 989 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 BMP15O95972 392 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 HSP90AA1P07900 732 aaKnown RBP16.8■□□□□ 0.28
CPSF1-208ENST00000532560 MUTP22033 750 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 RPA1P27694 616 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 CD52P31358 61 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 PBX2P40425 430 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 CRYBB1P53674 252 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-208ENST00000532560 RESTQ13127 1097 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 PAK2Q13177 524 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 PDIA5Q14554 519 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 KIZQ2M2Z5 673 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 ZNF697Q5TEC3 545 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 CATSPER3Q86XQ3 398 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 ZNF579Q8NAF0 562 aaKnown RBP16.8■□□□□ 0.28
CPSF1-208ENST00000532560 TIFAQ96CG3 184 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 ADAMTS10Q9H324 1103 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 CDHR5Q9HBB8 845 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 MSRAQ9UJ68 235 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 MTMR6Q9Y217 621 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 GINS2Q9Y248 185 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 STK24Q9Y6E0 443 aa16.8■□□□□ 0.28
CPSF1-208ENST00000532560 ZBTB39O15060 712 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 AMHP03971 560 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 XRCC6P12956 609 aaKnown RBP eCLIP16.79■□□□□ 0.28
CPSF1-208ENST00000532560 DNM2P50570 870 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 GPC3P51654 580 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 POLGP54098 1239 aaPredicted RBP16.79■□□□□ 0.28
CPSF1-208ENST00000532560 NLRP11P59045 1033 aaKnown RBP16.79■□□□□ 0.28
CPSF1-208ENST00000532560 CDC42EP1Q00587 391 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 DRP2Q13474 957 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 IL17AQ16552 155 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 XKR9Q5GH70 373 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 ARL6IP4Q66PJ3 421 aaKnown RBP16.79■□□□□ 0.28
CPSF1-208ENST00000532560 DTHD1Q6ZMT9 781 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 DEFB123Q8N688 67 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 TMEM40Q8WWA1 233 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 PPP1R16BQ96T49 567 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 OSMRQ99650 979 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 FTHL17Q9BXU8 183 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 LRWD1Q9UFC0 647 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 PADI3Q9ULW8 664 aa16.79■□□□□ 0.28
CPSF1-208ENST00000532560 YBX2Q9Y2T7 364 aaKnown RBP16.79■□□□□ 0.28
CPSF1-208ENST00000532560 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.78■□□□□ 0.28
CPSF1-208ENST00000532560 RPS6KA5O75582 802 aa16.78■□□□□ 0.28
CPSF1-208ENST00000532560 GJB5O95377 273 aa16.78■□□□□ 0.28
CPSF1-208ENST00000532560 PDIA4P13667 645 aaKnown RBP16.78■□□□□ 0.28
CPSF1-208ENST00000532560 RARRES1P49788 294 aa16.78■□□□□ 0.28
CPSF1-208ENST00000532560 RABGGTBP53611 331 aa16.78■□□□□ 0.28
CPSF1-208ENST00000532560 EMC2Q15006 297 aa16.78■□□□□ 0.28
CPSF1-208ENST00000532560 ODR4Q5SWX8 454 aa16.78■□□□□ 0.28
CPSF1-208ENST00000532560 POTEGQ6S5H5 508 aa16.78■□□□□ 0.28
CPSF1-208ENST00000532560 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.78■□□□□ 0.28
CPSF1-208ENST00000532560 CCDC43Q96MW1 224 aaKnown RBP16.78■□□□□ 0.28
CPSF1-208ENST00000532560 ERVK-5Q9HDB9 667 aa16.78■□□□□ 0.28
CPSF1-208ENST00000532560 DBR1Q9UK59 544 aaKnown RBP16.78■□□□□ 0.28
CPSF1-208ENST00000532560 NOC2LQ9Y3T9 749 aaKnown RBP16.78■□□□□ 0.28
CPSF1-208ENST00000532560 DGAT1O75907 488 aa16.77■□□□□ 0.28
CPSF1-208ENST00000532560 CCT6AP40227 531 aaKnown RBP16.77■□□□□ 0.28
CPSF1-208ENST00000532560 Q7L0L9 218 aa16.77■□□□□ 0.28
CPSF1-208ENST00000532560 ZNF410Q86VK4 478 aa16.77■□□□□ 0.28
CPSF1-208ENST00000532560 FAM228AQ86W67 206 aa16.77■□□□□ 0.28
CPSF1-208ENST00000532560 MYOCDQ8IZQ8 938 aa16.77■□□□□ 0.28
CPSF1-208ENST00000532560 PIGOQ8TEQ8 1089 aa16.77■□□□□ 0.28
CPSF1-208ENST00000532560 TCP11Q8WWU5 503 aa16.77■□□□□ 0.28
CPSF1-208ENST00000532560 LINC01599Q8WXQ3 324 aa16.77■□□□□ 0.28
CPSF1-208ENST00000532560 NACC1Q96RE7 527 aa16.77■□□□□ 0.28
CPSF1-208ENST00000532560 MTRQ99707 1265 aa16.77■□□□□ 0.28
CPSF1-208ENST00000532560 TSPYL2Q9H2G4 693 aaPredicted RBP16.77■□□□□ 0.28
CPSF1-208ENST00000532560 TTYH1Q9H313 450 aaPredicted RBP16.77■□□□□ 0.28
CPSF1-208ENST00000532560 TMX1Q9H3N1 280 aa16.77■□□□□ 0.28
CPSF1-208ENST00000532560 ZSCAN16Q9H4T2 348 aaPredicted RBP16.77■□□□□ 0.28
CPSF1-208ENST00000532560 ATP6V0A4Q9HBG4 840 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms