RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 SYCP2LQ5T4T6 812 aa4.23□□□□□ -1.73
CD44-229ENST00000528672 CXorf57Q6NSI4 855 aaKnown RBP4.23□□□□□ -1.73
CD44-229ENST00000528672 CYP4F22Q6NT55 531 aa4.23□□□□□ -1.73
CD44-229ENST00000528672 HHIPL2Q6UWX4 724 aa4.23□□□□□ -1.73
CD44-229ENST00000528672 IGDCC3Q8IVU1 814 aa4.23□□□□□ -1.73
CD44-229ENST00000528672 CBARPQ8N350 705 aaPredicted RBP4.23□□□□□ -1.73
CD44-229ENST00000528672 ALG3Q92685 438 aa4.23□□□□□ -1.73
CD44-229ENST00000528672 FUBP3Q96I24 572 aaKnown RBP eCLIP4.23□□□□□ -1.73
CD44-229ENST00000528672 MPHOSPH6Q99547 160 aaKnown RBP4.23□□□□□ -1.73
CD44-229ENST00000528672 AMNQ9BXJ7 453 aa4.23□□□□□ -1.73
CD44-229ENST00000528672 AP5M1Q9H0R1 490 aa4.23□□□□□ -1.73
CD44-229ENST00000528672 EPB41L4AQ9HCS5 686 aaPredicted RBP4.23□□□□□ -1.73
CD44-229ENST00000528672 NGRNQ9NPE2 291 aaKnown RBP4.23□□□□□ -1.73
CD44-229ENST00000528672 TOMM22Q9NS69 142 aa4.23□□□□□ -1.73
CD44-229ENST00000528672 CNOT6Q9ULM6 557 aaKnown RBP4.23□□□□□ -1.73
CD44-229ENST00000528672 B3GALT1Q9Y5Z6 326 aa4.23□□□□□ -1.73
CD44-229ENST00000528672 WASHC2AQ641Q2 1341 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 A0A1B0GTL3 188 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 PRAMEF22A3QJZ6 481 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 ELL2O00472 640 aaPredicted RBP4.22□□□□□ -1.73
CD44-229ENST00000528672 MPIG6BO95866 241 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 NCAM1P13591 858 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 SCAND1P57086 179 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 SESN3P58005 492 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 SPIRE1Q08AE8 756 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 KLF1Q13351 362 aaPredicted RBP4.22□□□□□ -1.73
CD44-229ENST00000528672 TCIRG1Q13488 830 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 SSPNQ14714 243 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 ODF1Q14990 250 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 ARHGAP44Q17R89 818 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 PAN2Q504Q3 1202 aaKnown RBP4.22□□□□□ -1.73
CD44-229ENST00000528672 ZBTB41Q5SVQ8 909 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 PRAMEF18Q5VWM3 479 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 KRTAP5-3Q6L8H2 238 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 TEPPQ6URK8 271 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 CD300LDQ6UXZ3 194 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 DGKHQ86XP1 1220 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 TICAM2Q86XR7 235 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 SAMD3Q8N6K7 520 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 ASB15Q8WXK1 588 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 FOXRED1Q96CU9 486 aaPredicted RBP4.22□□□□□ -1.73
CD44-229ENST00000528672 SCYL1Q96KG9 808 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 SLC2A13Q96QE2 648 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 SLC13A1Q9BZW2 595 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 POFUT1Q9H488 388 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 SMOC1Q9H4F8 434 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 BTBD7Q9P203 1132 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 ZNF652Q9Y2D9 606 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 ANKRD6Q9Y2G4 727 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 KCTD3Q9Y597 815 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 ATP23Q9Y6H3 246 aa4.22□□□□□ -1.73
CD44-229ENST00000528672 VSTM5A8MXK1 200 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 NUAK1O60285 661 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 MAFKO60675 156 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 IL18BPO95998 194 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 CFBP00751 764 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 RECQLP46063 649 aaPredicted RBP4.21□□□□□ -1.74
CD44-229ENST00000528672 RGS3P49796 1198 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 EPHA5P54756 1037 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 ERVK-21P61565 698 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 SMAD3P84022 425 aaKnown RBP4.21□□□□□ -1.74
CD44-229ENST00000528672 SAFB2Q14151 953 aaKnown RBP eCLIP4.21□□□□□ -1.74
CD44-229ENST00000528672 ACAP1Q15027 740 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 PCBP2Q15366 365 aaKnown RBP eCLIP4.21□□□□□ -1.74
CD44-229ENST00000528672 SMAD2Q15796 467 aaKnown RBP4.21□□□□□ -1.74
CD44-229ENST00000528672 DDB1Q16531 1140 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 INAVAQ3KP66 663 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 MINDY4Q4G0A6 757 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 CT83Q5H943 113 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 TCERG1LQ5VWI1 586 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 PGM2L1Q6PCE3 622 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 TSHZ1Q6ZSZ6 1077 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 B3GNT8Q7Z7M8 397 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 PNMA8AQ86V59 439 aaPredicted RBP4.21□□□□□ -1.74
CD44-229ENST00000528672 FAM129CQ86XR2 697 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 MIB1Q86YT6 1006 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 TPH2Q8IWU9 490 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 SMARCC2Q8TAQ2 1214 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 PHOSPHO1Q8TCT1 267 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 SLC5A5Q92911 643 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 DACT3Q96B18 629 aaPredicted RBP4.21□□□□□ -1.74
CD44-229ENST00000528672 FAXDC2Q96IV6 333 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 GORASP1Q9BQQ3 440 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 BOCQ9BWV1 1114 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 ANO3Q9BYT9 981 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 PDGFDQ9GZP0 370 aaPredicted RBP4.21□□□□□ -1.74
CD44-229ENST00000528672 ZNF700Q9H0M5 742 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 TCF7L1Q9HCS4 588 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 C14orf119Q9NWQ9 140 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 OBP2AQ9NY56 170 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 PNMA8BQ9ULN7 279 aaPredicted RBP4.21□□□□□ -1.74
CD44-229ENST00000528672 MRFAP1Q9Y605 127 aa4.21□□□□□ -1.74
CD44-229ENST00000528672 CREB3O43889 395 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 PCDHGA12O60330 932 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 APOL3O95236 402 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 LDHAP00338 332 aaKnown RBP4.2□□□□□ -1.74
CD44-229ENST00000528672 LPLP06858 475 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 CELA3BP08861 270 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 PF4V1P10720 104 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 FAHP16930 419 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms