RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ATP6V0A4Q9HBG4 840 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 RNF186Q9NXI6 227 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 CBFA2T2O43439 604 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 TRPA1O75762 1119 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 MYBP10242 640 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 XRCC5P13010 732 aaKnown RBP23.22■■□□□ 1.31
VPS28-208ENST00000527797 PLS3P13797 630 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 PTGS1P23219 599 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 CYP2C19P33261 490 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 UBASH3AP57075 661 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 SPAG1Q07617 926 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 BBXQ8WY36 941 aaPredicted RBP23.22■■□□□ 1.31
VPS28-208ENST00000527797 EIF3DO15371 548 aaKnown RBP eCLIP23.22■■□□□ 1.31
VPS28-208ENST00000527797 IGHA2P01877 340 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 ZNF865P0CJ78 1059 aaPredicted RBP23.22■■□□□ 1.31
VPS28-208ENST00000527797 MAPTP10636 758 aaKnown RBP23.22■■□□□ 1.31
VPS28-208ENST00000527797 NMT1P30419 496 aaKnown RBP23.22■■□□□ 1.31
VPS28-208ENST00000527797 BMT2Q1RMZ1 405 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 ZNF720Q7Z2F6 126 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 ZNF507Q8TCN5 953 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 AFG1LQ8WV93 481 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 KIFAP3Q92845 792 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 FIZ1Q96SL8 496 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 XPO4Q9C0E2 1151 aaKnown RBP23.22■■□□□ 1.31
VPS28-208ENST00000527797 PDLIM7Q9NR12 457 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 PPME1Q9Y570 386 aa23.22■■□□□ 1.31
VPS28-208ENST00000527797 PRPF6O94906 941 aaKnown RBP23.21■■□□□ 1.31
VPS28-208ENST00000527797 FGFR1OPO95684 399 aaKnown RBP23.21■■□□□ 1.31
VPS28-208ENST00000527797 CDC25BP30305 580 aa23.21■■□□□ 1.31
VPS28-208ENST00000527797 POLGP54098 1239 aaPredicted RBP23.21■■□□□ 1.31
VPS28-208ENST00000527797 KNOP1Q1ED39 458 aaKnown RBP23.21■■□□□ 1.31
VPS28-208ENST00000527797 TRIM50Q86XT4 487 aa23.21■■□□□ 1.31
VPS28-208ENST00000527797 ANKRD20A12PQ8NF67 263 aa23.21■■□□□ 1.31
VPS28-208ENST00000527797 OR6J1Q8NGC5 347 aa23.21■■□□□ 1.31
VPS28-208ENST00000527797 ATP8B4Q8TF62 1192 aa23.21■■□□□ 1.31
VPS28-208ENST00000527797 GPRC5CQ9NQ84 441 aa23.21■■□□□ 1.31
VPS28-208ENST00000527797 PCDHB13Q9Y5F0 798 aa23.21■■□□□ 1.31
VPS28-208ENST00000527797 PPFIA4O75335 1185 aa23.2■■□□□ 1.3
VPS28-208ENST00000527797 MARK3P27448 753 aa23.2■■□□□ 1.3
VPS28-208ENST00000527797 RFC5P40937 340 aa23.2■■□□□ 1.3
VPS28-208ENST00000527797 TARBP2Q15633 366 aaKnown RBP23.2■■□□□ 1.3
VPS28-208ENST00000527797 FAM114A1Q8IWE2 563 aa23.2■■□□□ 1.3
VPS28-208ENST00000527797 CTAGE1Q96RT6 745 aa23.2■■□□□ 1.3
VPS28-208ENST00000527797 KCTD10Q9H3F6 313 aa23.2■■□□□ 1.3
VPS28-208ENST00000527797 MAGEC2Q9UBF1 373 aaPredicted RBP23.2■■□□□ 1.3
VPS28-208ENST00000527797 GABRQQ9UN88 632 aa23.2■■□□□ 1.3
VPS28-208ENST00000527797 UBE4BO95155 1302 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 KCNJ18B7U540 433 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 LGALS2P05162 132 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 FLT3LGP49771 235 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 KCNJ12Q14500 433 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 EMC2Q15006 297 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 PLCB4Q15147 1175 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 ZCWPW2Q504Y3 356 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 DRC7Q8IY82 874 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 SLC17A8Q8NDX2 589 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 SLC7A3Q8WY07 619 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 DHX33Q9H6R0 707 aaKnown RBP23.19■■□□□ 1.3
VPS28-208ENST00000527797 C17orf75Q9HAS0 396 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 XPNPEP1Q9NQW7 623 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 ERAP1Q9NZ08 941 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 K7ENM7 598 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 TPM3P06753 285 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 HTRA3P83110 453 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 ALCAMQ13740 583 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 TCP11X2Q5H9J9 407 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 PPP4R3CPQ6ZMV5 832 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 CREBRFQ8IUR6 639 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 CEP89Q96ST8 783 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 LIMA1Q9UHB6 759 aaKnown RBP23.19■■□□□ 1.3
VPS28-208ENST00000527797 NRBP1Q9UHY1 535 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 FAM184BQ9ULE4 1060 aa23.19■■□□□ 1.3
VPS28-208ENST00000527797 GNEQ9Y223 722 aaKnown RBP23.19■■□□□ 1.3
VPS28-208ENST00000527797 PTMAP06454 111 aaKnown RBP23.18■■□□□ 1.3
VPS28-208ENST00000527797 EEF1GP26641 437 aaKnown RBP23.18■■□□□ 1.3
VPS28-208ENST00000527797 PEX3P56589 373 aa23.18■■□□□ 1.3
VPS28-208ENST00000527797 RTP1P59025 263 aa23.18■■□□□ 1.3
VPS28-208ENST00000527797 PRKCZQ05513 592 aa23.18■■□□□ 1.3
VPS28-208ENST00000527797 ZC2HC1CQ53FD0 456 aaPredicted RBP23.18■■□□□ 1.3
VPS28-208ENST00000527797 MFSD14CQ5VZR4 134 aa23.18■■□□□ 1.3
VPS28-208ENST00000527797 IRF2BP1Q8IU81 584 aa23.18■■□□□ 1.3
VPS28-208ENST00000527797 EXOC8Q8IYI6 725 aa23.18■■□□□ 1.3
VPS28-208ENST00000527797 NAP1L5Q96NT1 182 aaPredicted RBP23.18■■□□□ 1.3
VPS28-208ENST00000527797 PDXKO00764 312 aa23.17■■□□□ 1.3
VPS28-208ENST00000527797 DYNC1LI2O43237 492 aaPredicted RBP23.17■■□□□ 1.3
VPS28-208ENST00000527797 ADCY6O43306 1168 aa23.17■■□□□ 1.3
VPS28-208ENST00000527797 CALUO43852 315 aaPredicted RBP23.17■■□□□ 1.3
VPS28-208ENST00000527797 HBP1O60381 514 aa23.17■■□□□ 1.3
VPS28-208ENST00000527797 MMP3P08254 477 aa23.17■■□□□ 1.3
VPS28-208ENST00000527797 SMTNP53814 917 aa23.17■■□□□ 1.3
VPS28-208ENST00000527797 FKBP3Q00688 224 aaKnown RBP23.17■■□□□ 1.3
VPS28-208ENST00000527797 DMP1Q13316 513 aaPredicted RBP23.17■■□□□ 1.3
VPS28-208ENST00000527797 EDRF1Q3B7T1 1238 aa23.17■■□□□ 1.3
VPS28-208ENST00000527797 FILIP1LQ4L180 1135 aa23.17■■□□□ 1.3
VPS28-208ENST00000527797 STRA6Q9BX79 667 aa23.17■■□□□ 1.3
VPS28-208ENST00000527797 ST6GALNAC4Q9H4F1 302 aa23.17■■□□□ 1.3
VPS28-208ENST00000527797 TYW1Q9NV66 732 aaKnown RBP23.17■■□□□ 1.3
VPS28-208ENST00000527797 KCNG1Q9UIX4 513 aa23.17■■□□□ 1.3
VPS28-208ENST00000527797 TRPC6Q9Y210 931 aa23.17■■□□□ 1.3
VPS28-208ENST00000527797 TRAF3IP3Q9Y228 551 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms