RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 HELLSQ9NRZ9 838 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 CLDND1Q9NY35 253 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 LRFN1Q9P244 771 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 STXBP5LQ9Y2K9 1186 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 CDC14CA4D256 554 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 FOXN3O00409 490 aaPredicted RBP6.35□□□□□ -1.39
USP47-204ENST00000525078 DDX3XO00571 662 aaKnown RBP eCLIP6.35□□□□□ -1.39
USP47-204ENST00000525078 LILRB5O75023 590 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 XBP1P17861 261 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 RPL17P18621 184 aaKnown RBP6.35□□□□□ -1.39
USP47-204ENST00000525078 CYP7A1P22680 504 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 CNTFP26441 200 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 KRT20P35900 424 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 IL12RB1P42701 662 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 BCAR1P56945 870 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 KRT76Q01546 638 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 NMIQ13287 307 aaPredicted RBP6.35□□□□□ -1.39
USP47-204ENST00000525078 LSAMPQ13449 338 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 DUOXA2Q1HG44 320 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 SPATA1Q5VX52 437 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 MBNL2Q5VZF2 373 aaKnown RBP6.35□□□□□ -1.39
USP47-204ENST00000525078 EEF1DP3Q658K8 133 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 HIBCHQ6NVY1 386 aaPredicted RBP6.35□□□□□ -1.39
USP47-204ENST00000525078 ESRP1Q6NXG1 681 aaKnown RBP6.35□□□□□ -1.39
USP47-204ENST00000525078 APOA5Q6Q788 366 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 ARHGAP36Q6ZRI8 547 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 FASTKD5Q7L8L6 764 aaKnown RBP6.35□□□□□ -1.39
USP47-204ENST00000525078 CXorf67Q86X51 503 aaPredicted RBP6.35□□□□□ -1.39
USP47-204ENST00000525078 TMEM151AQ8N4L1 468 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 ESX1Q8N693 406 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 GPR161Q8N6U8 529 aaKnown RBP6.35□□□□□ -1.39
USP47-204ENST00000525078 MARCH10Q8NA82 808 aaPredicted RBP6.35□□□□□ -1.39
USP47-204ENST00000525078 SLC30A5Q8TAD4 765 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 UBASH3BQ8TF42 649 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 AUTS2Q8WXX7 1259 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 APIPQ96GX9 242 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 RAX2Q96IS3 184 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 ZNF496Q96IT1 587 aaPredicted RBP6.35□□□□□ -1.39
USP47-204ENST00000525078 TMEM120AQ9BXJ8 343 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 IRAK4Q9NWZ3 460 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 GRHPRQ9UBQ7 328 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 KCNH3Q9ULD8 1083 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 TMX2Q9Y320 296 aa6.35□□□□□ -1.39
USP47-204ENST00000525078 TRBV23OR9-2A0A075B6M9 112 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 BICDL2A1A5D9 508 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 CCDC154A6NI56 674 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 FGF18O76093 207 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 TMEM253P0C7T8 217 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 CTSKP43235 329 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 MRPS9P82933 396 aaKnown RBP6.34□□□□□ -1.39
USP47-204ENST00000525078 PMS2P11Q13670 270 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 TMEM132BQ14DG7 1078 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 SNX17Q15036 470 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 POSTNQ15063 836 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 IFI16Q16666 785 aaKnown RBP6.34□□□□□ -1.39
USP47-204ENST00000525078 INF2Q27J81 1249 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 CCDC30Q5VVM6 783 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 MSL1Q68DK7 614 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 RCSD1Q6JBY9 416 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 HHIPL2Q6UWX4 724 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 KCNK18Q7Z418 384 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 COL23A1Q86Y22 540 aaPredicted RBP6.34□□□□□ -1.39
USP47-204ENST00000525078 OXR1Q8N573 874 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 ATG16L2Q8NAA4 619 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 BRI3BPQ8WY22 251 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 JAM3Q9BX67 310 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 BRD9Q9H8M2 597 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 ARMT1Q9H993 441 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 ZNF287Q9HBT7 754 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 KCNK4Q9NYG8 393 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 USP36Q9P275 1121 aaKnown RBP6.34□□□□□ -1.39
USP47-204ENST00000525078 OGDHLQ9ULD0 1010 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 SRPK3Q9UPE1 567 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 TMEM98Q9Y2Y6 226 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 NR2E3Q9Y5X4 410 aa6.34□□□□□ -1.39
USP47-204ENST00000525078 APOL1O14791 398 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 TIPRLO75663 272 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 SLITRK5O94991 958 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 GDF11O95390 407 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 AMY2AP04746 511 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 POLBP06746 335 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 LPLP06858 475 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 GSTM1P09488 218 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 AMY2BP19961 511 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 MX2P20592 715 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 PDIA3P30101 505 aaKnown RBP6.33□□□□□ -1.4
USP47-204ENST00000525078 ADD2P35612 726 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 RAD52P43351 418 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 SOX4Q06945 474 aaPredicted RBP6.33□□□□□ -1.4
USP47-204ENST00000525078 SPIRE1Q08AE8 756 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 DUSP4Q13115 394 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 NBPF8Q3BBV2 869 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 CPZQ66K79 652 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 FSTL4Q6MZW2 842 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 LMBR1LQ6UX01 489 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 ESPNLQ6ZVH7 1005 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 CACNA2D3Q8IZS8 1091 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 C12orf50Q8NA57 414 aaPredicted RBP6.33□□□□□ -1.4
USP47-204ENST00000525078 RMDN3Q96TC7 470 aa6.33□□□□□ -1.4
USP47-204ENST00000525078 MMP19Q99542 508 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms