RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 MAGEF1Q9HAY2 307 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 ANKEF1Q9NU02 776 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 KCND2Q9NZV8 630 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 KCNG1Q9UIX4 513 aa8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 SRPRBQ9Y5M8 271 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-222ENST00000515847 MYH9P35579 1960 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 TANC1Q9C0D5 1861 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 UMODL1Q5DID0 1318 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 ARHGEF35A5YM69 484 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 CUTAO60888 179 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 DGAT1O75907 488 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 SCP2P22307 547 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 HOXC8P31273 242 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 YWHABP31946 246 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 ABCD1P33897 745 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 ME1P48163 572 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 MDM2Q00987 491 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 SPIRE1Q08AE8 756 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 NBR1Q14596 966 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 PLCB4Q15147 1175 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 FOXD4L5Q5VV16 416 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 CABP7Q86V35 215 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 TPH2Q8IWU9 490 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 NME8Q8N427 588 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 TMEM199Q8N511 208 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 LINC00301Q8NCQ3 95 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 MCPH1Q8NEM0 835 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 FOXD4L4Q8WXT5 416 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 BADQ92934 168 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 CEP170P1Q96L14 293 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 CTAGE1Q96RT6 745 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 USP28Q96RU2 1077 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 NOC4LQ9BVI4 516 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 PPP1R12CQ9BZL4 782 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 HIPK3Q9H422 1215 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 ATP6V0A4Q9HBG4 840 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 TSHZ2Q9NRE2 1034 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 RYDENQ9NUL5 291 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 SETD4Q9NVD3 440 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 STK17AQ9UEE5 414 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 DBR1Q9UK59 544 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 DNM3Q9UQ16 869 aa8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 LAMA2P24043 3122 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-222ENST00000515847 KAT6AQ92794 2004 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 EML1O00423 815 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 TIMP1P01033 207 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 INSRRP14616 1297 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 RAG1P15918 1043 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 ATP4AP20648 1035 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 CYP2C18P33260 490 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 CYP4A11Q02928 519 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 CEBPZQ03701 1054 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 RBL2Q08999 1139 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 PPIGQ13427 754 aaKnown RBP eCLIP8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 TFDP1Q14186 410 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 UGCGQ16739 394 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 IER5Q5VY09 327 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 RPAINQ86UA6 219 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 USP38Q8NB14 1042 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 BANK1Q8NDB2 785 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 LMBR1Q8WVP7 490 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 DHX38Q92620 1227 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 WNT8BQ93098 351 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 DYDC2Q96IM9 177 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 SCLT1Q96NL6 688 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 HSD17B14Q9BPX1 270 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 NIFKQ9BYG3 293 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 CYP26B1Q9NR63 512 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 USP25Q9UHP3 1055 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 PCDHA2Q9Y5H9 948 aa8.63□□□□□ -1.03
LIMCH1-222ENST00000515847 TRIOBPQ9H2D6 2365 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 SMIM35A0A1B0GVV1 85 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 MBLAC1A4D2B0 266 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 DDX11L8A8MPP1 907 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 H0YCG3 227 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 ASAP2O43150 1006 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 TREHO43280 583 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 ZNF862O60290 1169 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 EFCAB14O75071 495 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 ACTN1P12814 892 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 DDIT3P35638 169 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 CCL23P55773 120 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 IGBP1P78318 339 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 ADAM17P78536 824 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 AMPD3Q01432 767 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 DNM1Q05193 864 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 CTTNQ14247 550 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 MXD4Q14582 209 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 PPP2R5AQ15172 486 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 PTPAQ15257 358 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 PCBP1Q15365 356 aaKnown RBP eCLIP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 ZRSR1Q15695 479 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 MTERF2Q49AM1 385 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 XKR9Q5GH70 373 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 HYIQ5T013 277 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 PSRC1Q6PGN9 363 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 TRMT1LQ7Z2T5 733 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 SERINC5Q86VE9 423 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 RPUSD2Q8IZ73 545 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 C4orf32Q8N8J7 132 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms