RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 MATR3P43243 847 aaKnown RBP eCLIP8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 GLYCTKQ8IVS8 523 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 KRT222Q8N1A0 295 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 CDK5RAP3Q96JB5 506 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 INPP4AQ96PE3 977 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 APOL5Q9BWW9 433 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 IFIH1Q9BYX4 1025 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 SLC28A3Q9HAS3 691 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 V9GYY5 206 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 PLXNB2O15031 1838 aa8.76□□□□□ -1.01
LIMCH1-219ENST00000514096 GSTTP1A0A1W2PQM5 241 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 RSPH10B2B2RC85 870 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 KRT18P05783 430 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 RSPH10BP0C881 870 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 MTMR8Q96EF0 704 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 GPRC5CQ9NQ84 441 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 SYNPO2Q9UMS6 1093 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 CTAGE5O15320 804 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 BAG4O95429 457 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 PAX7P23759 505 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 PRKCEQ02156 737 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 TERF2Q15554 542 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 NFRKBQ6P4R8 1299 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 POTEGQ6S5H5 508 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 ZNF579Q8NAF0 562 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 ST13P5Q8NFI4 369 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 AGO4Q9HCK5 861 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 ERAP1Q9NZ08 941 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 TBC1D7Q9P0N9 293 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 SLC4A7Q9Y6M7 1214 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 KAT6AQ92794 2004 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 SPATA31C2B4DYI2 1134 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 INO80B-WBP1J3KQ70 363 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 KCNA2P16389 499 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 POLGP54098 1239 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 PTGDRQ13258 359 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 NOLC1Q14978 699 aaKnown RBP eCLIP8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 TTC38Q5R3I4 469 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 EFCAB12Q6NXP0 572 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 KRT25Q7Z3Z0 450 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 TDHQ8IZJ6 230 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 INO80BQ9C086 356 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 CDHR5Q9HBB8 845 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 PNMA2Q9UL42 364 aa8.75□□□□□ -1.01
LIMCH1-219ENST00000514096 FRMD3A2A2Y4 597 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 LRRIQ4A6NIV6 560 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 A6NJR5 290 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 MYO1CO00159 1063 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 GATMP50440 423 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 DEFB103AP81534 67 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 FOXD4Q12950 439 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 CLUL1Q15846 466 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 FAM102BQ5T8I3 360 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 MIS18BP1Q6P0N0 1132 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 ZNF710Q8N1W2 664 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 KLHDC9Q8NEP7 349 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 GBP4Q96PP9 640 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 YME1L1Q96TA2 773 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 KIFC3Q9BVG8 833 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 CCDC39Q9UFE4 941 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 PCDHA10Q9Y5I2 948 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 CCDC169A6NNP5 214 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 NT5C1B-RDH14C9J2C7 533 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 TLL1O43897 1013 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 KIF4AO95239 1232 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 MMP1P03956 469 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 CA3P07451 260 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 SCP2P22307 547 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 CCT6AP40227 531 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 GPS2Q13227 327 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 ZNF467Q7Z7K2 595 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 RBM23Q86U06 439 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 FAM126BQ8IXS8 530 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 MYLIPQ8WY64 445 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 THOC1Q96FV9 657 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 CDHR1Q96JP9 859 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 ZSCAN31Q96LW9 406 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 CLIC6Q96NY7 704 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 TCHPQ9BT92 498 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 IGFLR1Q9H665 355 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 HCSTQ9UBK5 93 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 PHF24Q9UPV7 400 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 DENND3A2RUS2 1198 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 SLFN14P0C7P3 912 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 SREBF1P36956 1147 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 PPP1R18Q6NYC8 613 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 PPTC7Q8NI37 304 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 C16orf70Q9BSU1 422 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 SMARCAD1Q9H4L7 1026 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 NOL7Q9UMY1 257 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 ZKSCAN5Q9Y2L8 839 aa8.74□□□□□ -1.01
LIMCH1-219ENST00000514096 LAMB1P07942 1786 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 GON4LQ3T8J9 2241 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 MGAMO43451 1857 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 PEX14O75381 377 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 SUPT20HL2P0C7V6 817 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 IDEP14735 1019 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms