RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 KLHDC10Q6PID8 442 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 GBP4Q96PP9 640 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 KCNH7Q9NS40 1196 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 GOLGA8BA8MQT2 603 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 FOXN1O15353 648 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 FOXP2O15409 715 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 HIP1RO75146 1068 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 RPS6KA4O75676 772 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 RHOBTB3O94955 611 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 MPIG6BO95866 241 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 BMP5P22003 454 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 MAN2A2P49641 1150 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 ADAM15Q13444 863 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 RAB33AQ14088 237 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 SPTY2D1Q68D10 685 aaPredicted RBP4.6□□□□□ -1.67
NUP54-208ENST00000508604 ASB15Q8WXK1 588 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 GCDHQ92947 438 aaPredicted RBP4.6□□□□□ -1.67
NUP54-208ENST00000508604 GFM2Q969S9 779 aaKnown RBP4.6□□□□□ -1.67
NUP54-208ENST00000508604 TINF2Q9BSI4 451 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 NRDE2Q9H7Z3 1164 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 AGO3Q9H9G7 860 aaKnown RBP4.6□□□□□ -1.67
NUP54-208ENST00000508604 SH3BP1Q9Y3L3 701 aa4.6□□□□□ -1.67
NUP54-208ENST00000508604 ATP2C1P98194 919 aaPredicted RBP4.59□□□□□ -1.67
NUP54-208ENST00000508604 SYNE4Q8N205 404 aa4.59□□□□□ -1.67
NUP54-208ENST00000508604 HAS1Q92839 578 aa4.59□□□□□ -1.67
NUP54-208ENST00000508604 SLC7A6OSQ96CW6 309 aaPredicted RBP4.59□□□□□ -1.67
NUP54-208ENST00000508604 SLC6A15Q9H2J7 730 aa4.59□□□□□ -1.67
NUP54-208ENST00000508604 SMURF1Q9HCE7 757 aa4.59□□□□□ -1.67
NUP54-208ENST00000508604 SAE1Q9UBE0 346 aaPredicted RBP4.59□□□□□ -1.67
NUP54-208ENST00000508604 PCDHA9Q9Y5H5 950 aa4.59□□□□□ -1.67
NUP54-208ENST00000508604 TRAF5O00463 557 aa4.58□□□□□ -1.68
NUP54-208ENST00000508604 TCF3P15923 654 aa4.58□□□□□ -1.68
NUP54-208ENST00000508604 RGS19P49795 217 aa4.58□□□□□ -1.68
NUP54-208ENST00000508604 MTERF2Q49AM1 385 aa4.58□□□□□ -1.68
NUP54-208ENST00000508604 CISD2Q8N5K1 135 aaKnown RBP4.58□□□□□ -1.68
NUP54-208ENST00000508604 CTDP1Q9Y5B0 961 aaPredicted RBP4.58□□□□□ -1.68
NUP54-208ENST00000508604 PDPK1O15530 556 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 PPFIA4O75335 1185 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 MAFO75444 373 aaPredicted RBP4.57□□□□□ -1.68
NUP54-208ENST00000508604 CRTAMO95727 393 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 SMAD3P84022 425 aaKnown RBP4.57□□□□□ -1.68
NUP54-208ENST00000508604 SSRP1Q08945 709 aaKnown RBP4.57□□□□□ -1.68
NUP54-208ENST00000508604 TMEM132BQ14DG7 1078 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 ELAVL1Q15717 326 aaKnown RBP4.57□□□□□ -1.68
NUP54-208ENST00000508604 ZBTB38Q8NAP3 1195 aaPredicted RBP4.57□□□□□ -1.68
NUP54-208ENST00000508604 SLC43A3Q8NBI5 491 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 ERCC4Q92889 916 aaPredicted RBP4.57□□□□□ -1.68
NUP54-208ENST00000508604 E2F7Q96AV8 911 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 GPR87Q9BY21 358 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 GOLGA6L6A8MZA4 724 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 LMO1P25800 156 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 SDHAP31040 664 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 SCNN1GP51170 649 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 ADCY7P51828 1080 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 FAM209AQ5JX71 171 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 FAM111BQ6SJ93 734 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 PCSK4Q6UW60 755 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 GAREM2Q75VX8 874 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 SPATC1Q76KD6 591 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 CKAP2LQ8IYA6 745 aa4.57□□□□□ -1.68
NUP54-208ENST00000508604 RPUSD2Q8IZ73 545 aaKnown RBP4.57□□□□□ -1.68
NUP54-208ENST00000508604 RPL10LQ96L21 214 aaKnown RBP4.57□□□□□ -1.68
NUP54-208ENST00000508604 HECAQ9UBI9 543 aaPredicted RBP4.57□□□□□ -1.68
NUP54-208ENST00000508604 RBM8AQ9Y5S9 174 aaKnown RBP4.57□□□□□ -1.68
NUP54-208ENST00000508604 PCSK5Q92824 1860 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 SLC12A8A0AV02 714 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 GOLGA6L22H0YM25 854 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 EFCAB14O75071 495 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 MFAP3LO75121 409 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 GCP02774 474 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 STAT3P40763 770 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 BPIFB4P59827 614 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 MFSD5Q6N075 450 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 Q6ZRM9 215 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 NOSTRINQ8IVI9 506 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 ANKRD53Q8N9V6 530 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 SLC25A43Q8WUT9 341 aaPredicted RBP4.56□□□□□ -1.68
NUP54-208ENST00000508604 VOPP1Q96AW1 172 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 GMLQ99445 158 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 TCF25Q9BQ70 676 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 PPP1R1BQ9UD71 204 aaPredicted RBP4.56□□□□□ -1.68
NUP54-208ENST00000508604 PFDN2Q9UHV9 154 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 RCAN3Q9UKA8 241 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 DENND2AQ9ULE3 1009 aa4.56□□□□□ -1.68
NUP54-208ENST00000508604 STK10O94804 968 aaKnown RBP4.55□□□□□ -1.68
NUP54-208ENST00000508604 NUDT3O95989 172 aa4.55□□□□□ -1.68
NUP54-208ENST00000508604 C6orf222P0C671 652 aaPredicted RBP4.55□□□□□ -1.68
NUP54-208ENST00000508604 KRT4P19013 534 aa4.55□□□□□ -1.68
NUP54-208ENST00000508604 SLC25A3Q00325 362 aa4.55□□□□□ -1.68
NUP54-208ENST00000508604 SAFB2Q14151 953 aaKnown RBP eCLIP4.55□□□□□ -1.68
NUP54-208ENST00000508604 PTPAQ15257 358 aa4.55□□□□□ -1.68
NUP54-208ENST00000508604 SEC23AQ15436 765 aa4.55□□□□□ -1.68
NUP54-208ENST00000508604 KRT40Q6A162 431 aa4.55□□□□□ -1.68
NUP54-208ENST00000508604 ARL8AQ96BM9 186 aa4.55□□□□□ -1.68
NUP54-208ENST00000508604 DHRS4Q9BTZ2 278 aa4.55□□□□□ -1.68
NUP54-208ENST00000508604 GPRC5BQ9NZH0 403 aa4.55□□□□□ -1.68
NUP54-208ENST00000508604 TNFRSF18Q9Y5U5 241 aa4.55□□□□□ -1.68
NUP54-208ENST00000508604 ADCY3O60266 1144 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 FAM20BO75063 409 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 IPO13O94829 963 aaKnown RBP4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms