RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 GPR155Q7Z3F1 870 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 KIF18BQ86Y91 864 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 CHST13Q8NET6 341 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 OR2W6PQ8NHA6 318 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 DLG3Q92796 817 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 RPGRQ92834 1020 aaKnown RBP3.07□□□□□ -1.92
HMGB1-208ENST00000490788 SCYL1Q96KG9 808 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 TUBGCP5Q96RT8 1024 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 OR10A5Q9H207 317 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 BTBD7Q9P203 1132 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 ADAM29Q9UKF5 820 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 FAM184BQ9ULE4 1060 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 ARID4BQ4LE39 1312 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-208ENST00000490788 PTPRTO14522 1441 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 IQSEC2Q5JU85 1478 aa3.07□□□□□ -1.92
HMGB1-208ENST00000490788 A0A0G2JNJ9 132 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 GOLGA6L22H0YM25 854 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 TRAF5O00463 557 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 PRICKLE3O43900 615 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-208ENST00000490788 KIF21BO75037 1637 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 KLHL18O94889 574 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 APOL3O95236 402 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 ADRB1P08588 477 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 ZBTB48P10074 688 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-208ENST00000490788 MYCLP1P12525 358 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-208ENST00000490788 SLC9A1P19634 815 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 YY1P25490 414 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 HSD3B2P26439 372 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 MECP2P51608 486 aaKnown RBP3.06□□□□□ -1.92
HMGB1-208ENST00000490788 GYS2P54840 703 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 IL13RA1P78552 427 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 CD83Q01151 205 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 SLC6A3Q01959 620 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 ALDH6A1Q02252 535 aaKnown RBP3.06□□□□□ -1.92
HMGB1-208ENST00000490788 SEC23AQ15436 765 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 ZNF827Q17R98 1081 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 SKOR2Q2VWA4 1001 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-208ENST00000490788 TTC38Q5R3I4 469 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 CATSPEREQ5SY80 951 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 GRAMD4Q6IC98 578 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 SLFN12LQ6IEE8 588 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 SDE2Q6IQ49 451 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 LRSAM1Q6UWE0 723 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 PRRT2Q7Z6L0 340 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-208ENST00000490788 C7orf31Q8N865 590 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 LEO1Q8WVC0 666 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-208ENST00000490788 USP7Q93009 1102 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 AJUBAQ96IF1 538 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 LOXL4Q96JB6 756 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 GPR101Q96P66 508 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-208ENST00000490788 FOXB1Q99853 325 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 TARS2Q9BW92 718 aaKnown RBP3.06□□□□□ -1.92
HMGB1-208ENST00000490788 THG1LQ9NWX6 298 aaKnown RBP3.06□□□□□ -1.92
HMGB1-208ENST00000490788 Q9UFV3 132 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 CDC42EP3Q9UKI2 254 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 SYNPO2Q9UMS6 1093 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 TBX22Q9Y458 520 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 DUSP10Q9Y6W6 482 aa3.06□□□□□ -1.92
HMGB1-208ENST00000490788 SETD1AO15047 1707 aaKnown RBP3.05□□□□□ -1.92
HMGB1-208ENST00000490788 ST20-MTHFSA0A0A6YYL1 179 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 RASSF10A6NK89 507 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 OVOL3O00110 214 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 B4GALT3O60512 393 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 PDE8AO60658 829 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 F2P00734 622 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 COL6A1P12109 1028 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 CPEP16870 476 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 CD40P25942 277 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 ETV4P43268 484 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 SESN2P58004 480 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-208ENST00000490788 KRTAP10-2P60368 255 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 RAC3P60763 192 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 NFKB2Q00653 900 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 TOP3AQ13472 1001 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-208ENST00000490788 MOGSQ13724 837 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 EPHA7Q15375 998 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 TBC1D10BQ4KMP7 808 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-208ENST00000490788 TM4SF20Q53R12 229 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 PLEKHG4Q58EX7 1191 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 DALRD3Q5D0E6 543 aaKnown RBP3.05□□□□□ -1.92
HMGB1-208ENST00000490788 SLFN13Q68D06 897 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 FSTL4Q6MZW2 842 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 GIMAP6Q6P9H5 292 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 KIAA0907Q7Z7F0 614 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-208ENST00000490788 GGNQ86UU5 652 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 CIR1Q86X95 450 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-208ENST00000490788 PHYKPLQ8IUZ5 450 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 NXPE1Q8N323 547 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 EFHBQ8N7U6 833 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 GIMAP8Q8ND71 665 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-208ENST00000490788 MAML3Q96JK9 1138 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 LMF1Q96S06 567 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 AMNQ9BXJ7 453 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 ZDHHC5Q9C0B5 715 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 KATNBL1Q9H079 304 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 C12orf65Q9H3J6 166 aaKnown RBP3.05□□□□□ -1.92
HMGB1-208ENST00000490788 OXSMQ9NWU1 459 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 SAE1Q9UBE0 346 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-208ENST00000490788 RGS17Q9UGC6 210 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-208ENST00000490788 KCNG1Q9UIX4 513 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms