RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 HIP1RO75146 1068 aa4.75□□□□□ -1.65
CPSF3-205ENST00000489629 RAPGEF3O95398 923 aa4.75□□□□□ -1.65
CPSF3-205ENST00000489629 MEOX1P50221 254 aa4.75□□□□□ -1.65
CPSF3-205ENST00000489629 ARHGAP44Q17R89 818 aa4.75□□□□□ -1.65
CPSF3-205ENST00000489629 FNDC3BQ53EP0 1204 aaKnown RBP4.75□□□□□ -1.65
CPSF3-205ENST00000489629 USP39Q53GS9 565 aaKnown RBP4.75□□□□□ -1.65
CPSF3-205ENST00000489629 ZCCHC8Q6NZY4 707 aaKnown RBP4.75□□□□□ -1.65
CPSF3-205ENST00000489629 ZFPM1Q8IX07 1006 aa4.75□□□□□ -1.65
CPSF3-205ENST00000489629 RTKN2Q8IZC4 609 aa4.75□□□□□ -1.65
CPSF3-205ENST00000489629 ZNF808Q8N4W9 903 aaPredicted RBP4.75□□□□□ -1.65
CPSF3-205ENST00000489629 EXTL1Q92935 676 aa4.75□□□□□ -1.65
CPSF3-205ENST00000489629 FOXB1Q99853 325 aa4.75□□□□□ -1.65
CPSF3-205ENST00000489629 NELFAQ9H3P2 528 aa4.75□□□□□ -1.65
CPSF3-205ENST00000489629 AGO3Q9H9G7 860 aaKnown RBP4.75□□□□□ -1.65
CPSF3-205ENST00000489629 PLA2G3Q9NZ20 509 aa4.75□□□□□ -1.65
CPSF3-205ENST00000489629 CTDP1Q9Y5B0 961 aaPredicted RBP4.75□□□□□ -1.65
CPSF3-205ENST00000489629 HS3ST3A1Q9Y663 406 aa4.75□□□□□ -1.65
CPSF3-205ENST00000489629 M0R2C6 588 aa4.74□□□□□ -1.65
CPSF3-205ENST00000489629 TRAF5O00463 557 aa4.74□□□□□ -1.65
CPSF3-205ENST00000489629 GLRX3O76003 335 aaKnown RBP4.74□□□□□ -1.65
CPSF3-205ENST00000489629 FNTBP49356 437 aa4.74□□□□□ -1.65
CPSF3-205ENST00000489629 SQSTM1Q13501 440 aa4.74□□□□□ -1.65
CPSF3-205ENST00000489629 NRN1LQ496H8 165 aa4.74□□□□□ -1.65
CPSF3-205ENST00000489629 OR14K1Q8NGZ2 314 aa4.74□□□□□ -1.65
CPSF3-205ENST00000489629 ERCC4Q92889 916 aaPredicted RBP4.74□□□□□ -1.65
CPSF3-205ENST00000489629 FAM89AQ96GI7 184 aa4.74□□□□□ -1.65
CPSF3-205ENST00000489629 MRIQ9BWK5 157 aa4.74□□□□□ -1.65
CPSF3-205ENST00000489629 VWA7Q9Y334 891 aa4.74□□□□□ -1.65
CPSF3-205ENST00000489629 DNAJC8O75937 253 aaPredicted RBP4.73□□□□□ -1.65
CPSF3-205ENST00000489629 PRLP01236 227 aa4.73□□□□□ -1.65
CPSF3-205ENST00000489629 ASLP04424 464 aa4.73□□□□□ -1.65
CPSF3-205ENST00000489629 ACRV1P26436 265 aa4.73□□□□□ -1.65
CPSF3-205ENST00000489629 MSX2P35548 267 aaPredicted RBP4.73□□□□□ -1.65
CPSF3-205ENST00000489629 IGFALSP35858 605 aa4.73□□□□□ -1.65
CPSF3-205ENST00000489629 KLF10Q13118 480 aa4.73□□□□□ -1.65
CPSF3-205ENST00000489629 IGFL4Q6B9Z1 124 aa4.73□□□□□ -1.65
CPSF3-205ENST00000489629 USP51Q70EK9 711 aa4.73□□□□□ -1.65
CPSF3-205ENST00000489629 DDX53Q86TM3 631 aaKnown RBP4.73□□□□□ -1.65
CPSF3-205ENST00000489629 IL17DQ8TAD2 202 aa4.73□□□□□ -1.65
CPSF3-205ENST00000489629 DNAJC2Q99543 621 aaKnown RBP4.73□□□□□ -1.65
CPSF3-205ENST00000489629 KRTAP17-1Q9BYP8 105 aa4.73□□□□□ -1.65
CPSF3-205ENST00000489629 KANSL2Q9H9L4 492 aa4.73□□□□□ -1.65
CPSF3-205ENST00000489629 SAMD15Q9P1V8 674 aa4.73□□□□□ -1.65
CPSF3-205ENST00000489629 B4E1Z4 1266 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 NPIPB8E9PQR5 432 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 SLC26A4O43511 780 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 RGS3P49796 1198 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 ADCY7P51828 1080 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 KIF11P52732 1056 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 HMGA2P52926 109 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 ANTXR2P58335 489 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 ADAM8P78325 824 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 ADAM15Q13444 863 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 SAFB2Q14151 953 aaKnown RBP eCLIP4.72□□□□□ -1.65
CPSF3-205ENST00000489629 GRM7Q14831 915 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 CHST14Q8NCH0 376 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 SHCBP1Q8NEM2 672 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 RABGGTAQ92696 567 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 MAML3Q96JK9 1138 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 C16orf92Q96LL3 132 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 ZNF341Q9BYN7 854 aa4.72□□□□□ -1.65
CPSF3-205ENST00000489629 HECAQ9UBI9 543 aaPredicted RBP4.72□□□□□ -1.65
CPSF3-205ENST00000489629 TNPO3Q9Y5L0 923 aaKnown RBP4.72□□□□□ -1.65
CPSF3-205ENST00000489629 KRT37O76014 449 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 C1SP09871 688 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 DGCR2P98153 550 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 PTH1RQ03431 593 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 MAP3K12Q12852 859 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 RIN1Q13671 783 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 ZNF460Q14592 562 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 NFE2L2Q16236 605 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 CREB3L3Q68CJ9 461 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 SPTY2D1Q68D10 685 aaPredicted RBP4.71□□□□□ -1.66
CPSF3-205ENST00000489629 KLHDC10Q6PID8 442 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 ADGRE4PQ86SQ3 457 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 C1orf210Q8IVY1 113 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 CACTINQ8WUQ7 758 aaKnown RBP4.71□□□□□ -1.66
CPSF3-205ENST00000489629 LPPQ93052 612 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 NKD2Q969F2 451 aaPredicted RBP4.71□□□□□ -1.66
CPSF3-205ENST00000489629 E2F7Q96AV8 911 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 ACSS2Q9NR19 701 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 TLR9Q9NR96 1032 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 SAE1Q9UBE0 346 aaPredicted RBP4.71□□□□□ -1.66
CPSF3-205ENST00000489629 B4GALT6Q9UBX8 382 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 MAGEL2Q9UJ55 1249 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 ING1Q9UK53 422 aaPredicted RBP4.71□□□□□ -1.66
CPSF3-205ENST00000489629 FAM184BQ9ULE4 1060 aa4.71□□□□□ -1.66
CPSF3-205ENST00000489629 PTPDC1A2A3K4 754 aa4.7□□□□□ -1.66
CPSF3-205ENST00000489629 C2orf78A6NCI8 922 aa4.7□□□□□ -1.66
CPSF3-205ENST00000489629 SUV39H1O43463 412 aa4.7□□□□□ -1.66
CPSF3-205ENST00000489629 NARSO43776 548 aaKnown RBP4.7□□□□□ -1.66
CPSF3-205ENST00000489629 OPA1O60313 960 aa4.7□□□□□ -1.66
CPSF3-205ENST00000489629 SDSP20132 328 aa4.7□□□□□ -1.66
CPSF3-205ENST00000489629 HIBADHP31937 336 aaKnown RBP4.7□□□□□ -1.66
CPSF3-205ENST00000489629 STAT3P40763 770 aa4.7□□□□□ -1.66
CPSF3-205ENST00000489629 SESN2P58004 480 aaPredicted RBP4.7□□□□□ -1.66
CPSF3-205ENST00000489629 ATP2C1P98194 919 aaPredicted RBP4.7□□□□□ -1.66
CPSF3-205ENST00000489629 SLC6A3Q01959 620 aa4.7□□□□□ -1.66
CPSF3-205ENST00000489629 ROM1Q03395 351 aa4.7□□□□□ -1.66
CPSF3-205ENST00000489629 BMS1Q14692 1282 aaKnown RBP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms