RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-233	ENST00000489352	KBTBD3	Q8NAB2	608 aa		13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	KDF1	Q8NAX2	398 aa	Predicted RBP	13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	TNPO1	Q92973	898 aa	Known RBP	13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	KIF12	Q96FN5	646 aa		13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	TMEM169	Q96HH4	297 aa		13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	FAM126A	Q9BYI3	521 aa	Predicted RBP	13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	TMEM117	Q9H0C3	514 aa		13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	TMX1	Q9H3N1	280 aa		13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	RGS18	Q9NS28	235 aa		13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	SEMA4G	Q9NTN9	838 aa		13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	TMEM161A	Q9NX61	479 aa		13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	MAP3K20	Q9NYL2	800 aa	Known RBP	13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	ERAP1	Q9NZ08	941 aa		13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	GINS2	Q9Y248	185 aa		13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.36	□□□□□ -0.27
HDAC6-233	ENST00000489352	TMEM8B	A6NDV4	472 aa		13.35	□□□□□ -0.27
HDAC6-233	ENST00000489352	RRN3P2	A6NIE6	340 aa		13.35	□□□□□ -0.27
HDAC6-233	ENST00000489352	RAB11FIP3	O75154	756 aa		13.35	□□□□□ -0.27
HDAC6-233	ENST00000489352	RPS6KA5	O75582	802 aa		13.35	□□□□□ -0.27
HDAC6-233	ENST00000489352	NRL	P54845	237 aa		13.35	□□□□□ -0.27
HDAC6-233	ENST00000489352	KRT76	Q01546	638 aa		13.35	□□□□□ -0.27
HDAC6-233	ENST00000489352	C15orf39	Q6ZRI6	1047 aa		13.35	□□□□□ -0.27
HDAC6-233	ENST00000489352	STOX1	Q6ZVD7	989 aa		13.35	□□□□□ -0.27
HDAC6-233	ENST00000489352	VPS52	Q8N1B4	723 aa		13.35	□□□□□ -0.27
HDAC6-233	ENST00000489352	MYL10	Q9BUA6	226 aa		13.35	□□□□□ -0.27
HDAC6-233	ENST00000489352	CPVL	Q9H3G5	476 aa		13.35	□□□□□ -0.27
HDAC6-233	ENST00000489352	MBLAC1	A4D2B0	266 aa	Predicted RBP	13.34	□□□□□ -0.27
HDAC6-233	ENST00000489352	FAM170B	A6NMN3	283 aa		13.34	□□□□□ -0.27
HDAC6-233	ENST00000489352	NCAM2	O15394	837 aa		13.34	□□□□□ -0.27
HDAC6-233	ENST00000489352	GDF9	O60383	454 aa		13.34	□□□□□ -0.27
HDAC6-233	ENST00000489352	TCF7	P36402	384 aa	Predicted RBP	13.34	□□□□□ -0.27
HDAC6-233	ENST00000489352	HSD17B4	P51659	736 aa		13.34	□□□□□ -0.27
HDAC6-233	ENST00000489352	PPP2R5D	Q14738	602 aa		13.34	□□□□□ -0.27
HDAC6-233	ENST00000489352	CSRP2	Q16527	193 aa		13.34	□□□□□ -0.27
HDAC6-233	ENST00000489352	TSSK4	Q6SA08	328 aa		13.34	□□□□□ -0.27
HDAC6-233	ENST00000489352	ADGRF4	Q8IZF3	695 aa		13.34	□□□□□ -0.27
HDAC6-233	ENST00000489352	CELF5	Q8N6W0	485 aa	Known RBP	13.34	□□□□□ -0.27
HDAC6-233	ENST00000489352	VAT1L	Q9HCJ6	419 aa		13.34	□□□□□ -0.27
HDAC6-233	ENST00000489352	MYH15	Q9Y2K3	1946 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	SRRM3	A6NNA2	597 aa	Predicted RBP	13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352		C9IYK1	514 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	GPR182	O15218	404 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	MGEA5	O60502	916 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	HMMR	O75330	724 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	KLRC2	P26717	231 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	HOXA13	P31271	388 aa	Predicted RBP	13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	METAP2	P50579	478 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	SNW1	Q13573	536 aa	Known RBP	13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	QRICH1	Q2TAL8	776 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	AASDH	Q4L235	1098 aa	Predicted RBP	13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	ZBTB41	Q5SVQ8	909 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	MARCH8	Q5T0T0	291 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	ELMSAN1	Q6PJG2	1045 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	LRRC55	Q6ZSA7	311 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	NME8	Q8N427	588 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	GIMAP8	Q8ND71	665 aa	Predicted RBP	13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	IL31RA	Q8NI17	732 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	SLC22A17	Q8WUG5	538 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	AUTS2	Q8WXX7	1259 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	TTC14	Q96N46	770 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	ELAC1	Q9H777	363 aa	Known RBP	13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	SLC2A4RG	Q9NR83	387 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	EPS15L1	Q9UBC2	864 aa		13.33	□□□□□ -0.28
HDAC6-233	ENST00000489352	NAV2	Q8IVL1	2488 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	DOCK8	Q8NF50	2099 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	FIBP	O43427	364 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	ORC4	O43929	436 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	N4BP1	O75113	896 aa	Known RBP	13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	STAM2	O75886	525 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	SNHG28	P0DPA3	235 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	FCHSD1	Q86WN1	690 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	SLC39A11	Q8N1S5	342 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	SAMD3	Q8N6K7	520 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	CASD1	Q96PB1	797 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	AMN	Q9BXJ7	453 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	EMILIN2	Q9BXX0	1053 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	OSBPL6	Q9BZF3	934 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	TCP11L1	Q9NUJ3	509 aa		13.32	□□□□□ -0.28
HDAC6-233	ENST00000489352	WDFY3	Q8IZQ1	3526 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	EIF4E1B	A6NMX2	242 aa	Known RBP	13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	SPATA31C2	B4DYI2	1134 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	NT5C1B-RDH14	C9J2C7	533 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	RBM25	P49756	843 aa	Known RBP	13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	PRKCQ	Q04759	706 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	RNF169	Q8NCN4	708 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	FEZF2	Q8TBJ5	459 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	BBX	Q8WY36	941 aa	Predicted RBP	13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	NELL1	Q92832	810 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	ZBTB10	Q96DT7	871 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	SMARCAD1	Q9H4L7	1026 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	WDR6	Q9NNW5	1121 aa	Known RBP	13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	RTEL1	Q9NZ71	1219 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	ANKFY1	Q9P2R3	1169 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	DPP7	Q9UHL4	492 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	ST3GAL5	Q9UNP4	418 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	IRAK3	Q9Y616	596 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	LAMA4	Q16363	1823 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	HELZ2	Q9BYK8	2649 aa	Known RBP	13.31	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 24 ms