RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 TMEM105Q8N8V8 129 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 KREMEN2Q8NCW0 462 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 RUFY2Q8WXA3 655 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 OSMRQ99650 979 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 TCF25Q9BQ70 676 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 SDF4Q9BRK5 362 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 POMKQ9H5K3 350 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 ELAC1Q9H777 363 aaKnown RBP17.52■□□□□ 0.4
MCF2L-228ENST00000487354 GVINP1Q7Z2Y8 2422 aa17.51■□□□□ 0.39
MCF2L-228ENST00000487354 C2CD4DB7Z1M9 353 aa17.51■□□□□ 0.39
MCF2L-228ENST00000487354 GALR2O43603 387 aaPredicted RBP17.51■□□□□ 0.39
MCF2L-228ENST00000487354 HBP1O60381 514 aa17.51■□□□□ 0.39
MCF2L-228ENST00000487354 LIFRP42702 1097 aa17.51■□□□□ 0.39
MCF2L-228ENST00000487354 FUT2Q10981 343 aa17.51■□□□□ 0.39
MCF2L-228ENST00000487354 KIZQ2M2Z5 673 aa17.51■□□□□ 0.39
MCF2L-228ENST00000487354 FAM43BQ6ZT52 329 aaPredicted RBP17.51■□□□□ 0.39
MCF2L-228ENST00000487354 FEZF2Q8TBJ5 459 aa17.51■□□□□ 0.39
MCF2L-228ENST00000487354 TNPO1Q92973 898 aaKnown RBP17.51■□□□□ 0.39
MCF2L-228ENST00000487354 ANO3Q9BYT9 981 aa17.51■□□□□ 0.39
MCF2L-228ENST00000487354 DDX39AO00148 427 aaKnown RBP17.5■□□□□ 0.39
MCF2L-228ENST00000487354 CLK2P49760 499 aaKnown RBP17.5■□□□□ 0.39
MCF2L-228ENST00000487354 NUBP1P53384 320 aa17.5■□□□□ 0.39
MCF2L-228ENST00000487354 CRYBB1P53674 252 aaPredicted RBP17.5■□□□□ 0.39
MCF2L-228ENST00000487354 CASC1Q6TDU7 716 aa17.5■□□□□ 0.39
MCF2L-228ENST00000487354 KCNT2Q6UVM3 1135 aa17.5■□□□□ 0.39
MCF2L-228ENST00000487354 LINC01465Q8N7H1 131 aa17.5■□□□□ 0.39
MCF2L-228ENST00000487354 CRYGNQ8WXF5 182 aa17.5■□□□□ 0.39
MCF2L-228ENST00000487354 TMEM87BQ96K49 555 aa17.5■□□□□ 0.39
MCF2L-228ENST00000487354 TMEM117Q9H0C3 514 aa17.5■□□□□ 0.39
MCF2L-228ENST00000487354 ATP6V0A4Q9HBG4 840 aa17.5■□□□□ 0.39
MCF2L-228ENST00000487354 RIC8AQ9NPQ8 531 aa17.5■□□□□ 0.39
MCF2L-228ENST00000487354 ENTPD7Q9NQZ7 604 aa17.5■□□□□ 0.39
MCF2L-228ENST00000487354 IGLV3-22A0A075B6J6 115 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 PRR23AA6NEV1 266 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 CCDC69A6NI79 296 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 FAM86B1E9PN63 330 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 GPR182O15218 404 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 VTNP04004 478 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 FAM86B2P0C5J1 330 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 HOXB8P17481 243 aaPredicted RBP17.49■□□□□ 0.39
MCF2L-228ENST00000487354 MCM5P33992 734 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 SREBF1P36956 1147 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 NBL1P41271 181 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 CLLU1OSQ5K130 101 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 NFXL1Q6ZNB6 911 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 FANCBQ8NB91 859 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 LRRC2Q9BYS8 371 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 SORCS3Q9UPU3 1222 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 HCFC2Q9Y5Z7 792 aa17.49■□□□□ 0.39
MCF2L-228ENST00000487354 CACNA1AO00555 2505 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 C2orf71A6NGG8 1288 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 ADAMTS3O15072 1205 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 SRGAP2BP0DMP2 458 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 CALM1P0DP23 149 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 CALM2P0DP24 149 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 CALM3P0DP25 149 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 ZNF484Q5JVG2 852 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 SGMS1Q86VZ5 419 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 MICU3Q86XE3 530 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 LRRC43Q8N309 656 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 TMTC2Q8N394 836 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 LSG1Q9H089 658 aaKnown RBP17.48■□□□□ 0.39
MCF2L-228ENST00000487354 IRF2BPLQ9H1B7 796 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 ADAM7Q9H2U9 754 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 NGRNQ9NPE2 291 aaKnown RBP17.48■□□□□ 0.39
MCF2L-228ENST00000487354 ZNF302Q9NR11 478 aa17.48■□□□□ 0.39
MCF2L-228ENST00000487354 WDR87Q6ZQQ6 2873 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 ZNF292O60281 2723 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 DMXL1Q9Y485 3027 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 BACH1O14867 736 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 CLASP2O75122 1294 aaKnown RBP17.47■□□□□ 0.39
MCF2L-228ENST00000487354 WEE2P0C1S8 567 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 MTMR3Q13615 1198 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 FAM160B1Q5W0V3 765 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 PPP1R18Q6NYC8 613 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 PDXDC2PQ6P474 469 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 NIPA1Q7RTP0 329 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 ZNF598Q86UK7 904 aaKnown RBP17.47■□□□□ 0.39
MCF2L-228ENST00000487354 UBALD2Q8IYN6 164 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 SLC39A11Q8N1S5 342 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 ZNF558Q96NG5 402 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 ADAMTS10Q9H324 1103 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 TSHZ2Q9NRE2 1034 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 RNF216Q9NWF9 866 aaPredicted RBP17.47■□□□□ 0.39
MCF2L-228ENST00000487354 NR2E1Q9Y466 385 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 MAFBQ9Y5Q3 323 aaPredicted RBP17.47■□□□□ 0.39
MCF2L-228ENST00000487354 SLC12A7Q9Y666 1083 aa17.47■□□□□ 0.39
MCF2L-228ENST00000487354 SLC27A2O14975 620 aa17.46■□□□□ 0.39
MCF2L-228ENST00000487354 ASGR2P07307 311 aa17.46■□□□□ 0.39
MCF2L-228ENST00000487354 CLCN3P51790 818 aa17.46■□□□□ 0.39
MCF2L-228ENST00000487354 NAPAP54920 295 aa17.46■□□□□ 0.39
MCF2L-228ENST00000487354 ODR4Q5SWX8 454 aa17.46■□□□□ 0.39
MCF2L-228ENST00000487354 SWSAP1Q6NVH7 229 aa17.46■□□□□ 0.39
MCF2L-228ENST00000487354 KANK3Q6NY19 840 aa17.46■□□□□ 0.39
MCF2L-228ENST00000487354 ZBTB33Q86T24 672 aa17.46■□□□□ 0.39
MCF2L-228ENST00000487354 ECHDC2Q86YB7 292 aa17.46■□□□□ 0.39
MCF2L-228ENST00000487354 TEX2Q8IWB9 1127 aa17.46■□□□□ 0.39
MCF2L-228ENST00000487354 MRPL43Q8N983 215 aaKnown RBP17.46■□□□□ 0.39
MCF2L-228ENST00000487354 CASP10Q92851 521 aa17.46■□□□□ 0.39
MCF2L-228ENST00000487354 DNAH14Q0VDD8 3507 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms