RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 HAUS7Q99871 368 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 MTG1Q9BT17 334 aaPredicted RBP7.88□□□□□ -1.15
HDAC3-209ENST00000486618 PUS7LQ9H0K6 701 aaKnown RBP7.88□□□□□ -1.15
HDAC3-209ENST00000486618 C11orf16Q9NQ32 467 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 PDGFCQ9NRA1 345 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 TRMT13Q9NUP7 481 aaKnown RBP7.88□□□□□ -1.15
HDAC3-209ENST00000486618 MTMR4Q9NYA4 1195 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 MAP3K20Q9NYL2 800 aaKnown RBP7.88□□□□□ -1.15
HDAC3-209ENST00000486618 MARK1Q9P0L2 795 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 COL4A3BPQ9Y5P4 624 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 TRANK1O15050 2925 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 RAD50Q92878 1312 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 PLA2G6O60733 806 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 RECKO95980 971 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 S100BP04271 92 aaPredicted RBP7.87□□□□□ -1.15
HDAC3-209ENST00000486618 IQCF3P0C7M6 154 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 FAM200BP0CF97 657 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 TSPY3P0CV98 308 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 TSPY8P0CW00 308 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 AMPD1P23109 780 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 ADH6P28332 368 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 SLC1A4P43007 532 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 SSR1P43307 286 aaKnown RBP7.87□□□□□ -1.15
HDAC3-209ENST00000486618 PURAQ00577 322 aaKnown RBP7.87□□□□□ -1.15
HDAC3-209ENST00000486618 LAMC2Q13753 1193 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 TCEAL1Q15170 157 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 ZRSR2Q15696 482 aaKnown RBP7.87□□□□□ -1.15
HDAC3-209ENST00000486618 LRRFIP1Q32MZ4 808 aaKnown RBP7.87□□□□□ -1.15
HDAC3-209ENST00000486618 ZNF468Q5VIY5 522 aaPredicted RBP7.87□□□□□ -1.15
HDAC3-209ENST00000486618 NFRKBQ6P4R8 1299 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 NSMFQ6X4W1 530 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 FBXO16Q8IX29 292 aaPredicted RBP7.87□□□□□ -1.15
HDAC3-209ENST00000486618 GJD3Q8N144 294 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 LRRC47Q8N1G4 583 aaKnown RBP7.87□□□□□ -1.15
HDAC3-209ENST00000486618 CEP95Q96GE4 821 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 CEP63Q96MT8 703 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 STRBPQ96SI9 672 aaKnown RBP7.87□□□□□ -1.15
HDAC3-209ENST00000486618 MPHOSPH6Q99547 160 aaKnown RBP7.87□□□□□ -1.15
HDAC3-209ENST00000486618 WDR11Q9BZH6 1224 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 INO80BQ9C086 356 aaPredicted RBP7.87□□□□□ -1.15
HDAC3-209ENST00000486618 PHACTR1Q9C0D0 580 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 KCNH6Q9H252 994 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 AVENQ9NQS1 362 aaPredicted RBP7.87□□□□□ -1.15
HDAC3-209ENST00000486618 CYP39A1Q9NYL5 469 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 SCN10AQ9Y5Y9 1956 aa7.87□□□□□ -1.15
HDAC3-209ENST00000486618 ZNF536O15090 1300 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 GSG1L2A8MUP6 293 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 NKRFO15226 690 aaKnown RBP eCLIP7.86□□□□□ -1.15
HDAC3-209ENST00000486618 LPXNO60711 386 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 ATG7O95352 703 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 SLC3A2P08195 630 aaKnown RBP7.86□□□□□ -1.15
HDAC3-209ENST00000486618 RLBP1P12271 317 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 GNAT2P19087 354 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 ATP2B1P20020 1258 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 TDO2P48775 406 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 PDE4BQ07343 736 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 MTA1Q13330 715 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 LEXMQ3ZCV2 418 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 RCSD1Q6JBY9 416 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 FCHSD1Q86WN1 690 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 FMNL3Q8IVF7 1028 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 FAM178BQ8IXR5 827 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 OR6J1Q8NGC5 347 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 UIMC1Q96RL1 719 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 UBE2ZQ9H832 354 aaPredicted RBP7.86□□□□□ -1.15
HDAC3-209ENST00000486618 NEUROD4Q9HD90 331 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 MKL2Q9ULH7 1088 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 PRR12Q9ULL5 1215 aa7.86□□□□□ -1.15
HDAC3-209ENST00000486618 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.85□□□□□ -1.15
HDAC3-209ENST00000486618 B4DLN1 442 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 CBFA2T2O43439 604 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 EFCAB14O75071 495 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 PRDM1O75626 825 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 CD53P19397 219 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 PTGS1P23219 599 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 MRE11P49959 708 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 MRPL12P52815 198 aaKnown RBP7.85□□□□□ -1.15
HDAC3-209ENST00000486618 PCBP4P57723 403 aaKnown RBP7.85□□□□□ -1.15
HDAC3-209ENST00000486618 DPYDQ12882 1025 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 MUM1L1Q5H9M0 696 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 TMEM63BQ5T3F8 832 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 L1TD1Q5T7N2 865 aaKnown RBP7.85□□□□□ -1.15
HDAC3-209ENST00000486618 CAGE1Q8TC20 777 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 AFAP1L1Q8TED9 768 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 SCG3Q8WXD2 468 aaKnown RBP7.85□□□□□ -1.15
HDAC3-209ENST00000486618 DHX38Q92620 1227 aaKnown RBP7.85□□□□□ -1.15
HDAC3-209ENST00000486618 HSH2DQ96JZ2 352 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 BTBD6Q96KE9 485 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 TGS1Q96RS0 853 aaKnown RBP7.85□□□□□ -1.15
HDAC3-209ENST00000486618 CRBNQ96SW2 442 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 RAD9AQ99638 391 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 C2orf49Q9BVC5 232 aaPredicted RBP7.85□□□□□ -1.15
HDAC3-209ENST00000486618 NACAP1Q9BZK3 213 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 CD320Q9NPF0 282 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 CTNNA3Q9UI47 895 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 CCPG1Q9ULG6 757 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 FAM50BQ9Y247 325 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 TANC1Q9C0D5 1861 aa7.85□□□□□ -1.15
HDAC3-209ENST00000486618 ABHD14A-ACY1A0A1B0GW23 586 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 CHGBP05060 677 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms