RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 UBE3AQ05086 875 aa12.87□□□□□ -0.35
CCM2-213ENST00000480658 SAFBQ15424 915 aaKnown RBP eCLIP12.87□□□□□ -0.35
CCM2-213ENST00000480658 EFCAB12Q6NXP0 572 aa12.87□□□□□ -0.35
CCM2-213ENST00000480658 BANK1Q8NDB2 785 aa12.87□□□□□ -0.35
CCM2-213ENST00000480658 SLC7A3Q8WY07 619 aa12.87□□□□□ -0.35
CCM2-213ENST00000480658 NIFKQ9BYG3 293 aaKnown RBP12.87□□□□□ -0.35
CCM2-213ENST00000480658 UNC45AQ9H3U1 944 aa12.87□□□□□ -0.35
CCM2-213ENST00000480658 AGO3Q9H9G7 860 aaKnown RBP12.87□□□□□ -0.35
CCM2-213ENST00000480658 TMEM161AQ9NX61 479 aa12.87□□□□□ -0.35
CCM2-213ENST00000480658 CHD7Q9P2D1 2997 aa12.87□□□□□ -0.35
CCM2-213ENST00000480658 DAXXQ9UER7 740 aaPredicted RBP12.87□□□□□ -0.35
CCM2-213ENST00000480658 SEPT9Q9UHD8 586 aaPredicted RBP12.87□□□□□ -0.35
CCM2-213ENST00000480658 PRUNE2Q8WUY3 3088 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 RFXAPO00287 272 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 TDP2O95551 362 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 MMP1P03956 469 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 P4HBP07237 508 aaKnown RBP12.86□□□□□ -0.35
CCM2-213ENST00000480658 SKIP12755 728 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 ATP4AP20648 1035 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 SFPQP23246 707 aaKnown RBP eCLIP12.86□□□□□ -0.35
CCM2-213ENST00000480658 EIF4BP23588 611 aaKnown RBP12.86□□□□□ -0.35
CCM2-213ENST00000480658 NEK4P51957 841 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 ORC2Q13416 577 aaPredicted RBP12.86□□□□□ -0.35
CCM2-213ENST00000480658 PCBP1Q15365 356 aaKnown RBP eCLIP12.86□□□□□ -0.35
CCM2-213ENST00000480658 INF2Q27J81 1249 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 OTUD6AQ7L8S5 288 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 ZNF410Q86VK4 478 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 NEK9Q8TD19 979 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 ERVK-5Q9HDB9 667 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 KCNMB3Q9NPA1 279 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 CHST12Q9NRB3 414 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 ST3GAL5Q9UNP4 418 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 PCDHB12Q9Y5F1 795 aa12.86□□□□□ -0.35
CCM2-213ENST00000480658 A0A0C4DFX4 3053 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 PPFIA3O75145 1194 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 GPR32O75388 356 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 RFC5P40937 340 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 QARSP47897 775 aaKnown RBP12.85□□□□□ -0.35
CCM2-213ENST00000480658 NLRP11P59045 1033 aaKnown RBP12.85□□□□□ -0.35
CCM2-213ENST00000480658 HMGN5P82970 282 aaKnown RBP12.85□□□□□ -0.35
CCM2-213ENST00000480658 NPY5RQ15761 445 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 KIZQ2M2Z5 673 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 PDE12Q6L8Q7 609 aaKnown RBP12.85□□□□□ -0.35
CCM2-213ENST00000480658 B3GNT9Q6UX72 402 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 PIK3AP1Q6ZUJ8 805 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 ABI1Q8IZP0 508 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 CRIPAKQ8N1N5 446 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 LINC01465Q8N7H1 131 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 NLRP7Q8WX94 980 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 PABPC5Q96DU9 382 aaKnown RBP12.85□□□□□ -0.35
CCM2-213ENST00000480658 OSMRQ99650 979 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 ADAM2Q99965 735 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 LLPHQ9BRT6 129 aaKnown RBP12.85□□□□□ -0.35
CCM2-213ENST00000480658 MRPL9Q9BYD2 267 aaKnown RBP12.85□□□□□ -0.35
CCM2-213ENST00000480658 GCOM2Q9BZD3 368 aaPredicted RBP12.85□□□□□ -0.35
CCM2-213ENST00000480658 UBE2ZQ9H832 354 aaPredicted RBP12.85□□□□□ -0.35
CCM2-213ENST00000480658 UPF2Q9HAU5 1272 aaKnown RBP12.85□□□□□ -0.35
CCM2-213ENST00000480658 ATP6V0A4Q9HBG4 840 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 STK39Q9UEW8 545 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 KCNJ14Q9UNX9 436 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 KIF3AQ9Y496 699 aa12.85□□□□□ -0.35
CCM2-213ENST00000480658 MYH9P35579 1960 aaKnown RBP12.85□□□□□ -0.35
CCM2-213ENST00000480658 VTNP04004 478 aa12.84□□□□□ -0.35
CCM2-213ENST00000480658 SRGAP2BP0DMP2 458 aa12.84□□□□□ -0.35
CCM2-213ENST00000480658 PPM1AP35813 382 aa12.84□□□□□ -0.35
CCM2-213ENST00000480658 GPC3P51654 580 aa12.84□□□□□ -0.35
CCM2-213ENST00000480658 BMS1Q14692 1282 aaKnown RBP12.84□□□□□ -0.35
CCM2-213ENST00000480658 TARBP2Q15633 366 aaKnown RBP12.84□□□□□ -0.35
CCM2-213ENST00000480658 LEXMQ3ZCV2 418 aa12.84□□□□□ -0.35
CCM2-213ENST00000480658 LRRC43Q8N309 656 aa12.84□□□□□ -0.35
CCM2-213ENST00000480658 TCP11Q8WWU5 503 aa12.84□□□□□ -0.35
CCM2-213ENST00000480658 ZSCAN31Q96LW9 406 aaPredicted RBP12.84□□□□□ -0.35
CCM2-213ENST00000480658 SH2B1Q9NRF2 756 aaPredicted RBP12.84□□□□□ -0.35
CCM2-213ENST00000480658 LIMCH1Q9UPQ0 1083 aa12.84□□□□□ -0.35
CCM2-213ENST00000480658 NOC2LQ9Y3T9 749 aaKnown RBP12.84□□□□□ -0.35
CCM2-213ENST00000480658 NLRC5Q86WI3 1866 aa12.84□□□□□ -0.35
CCM2-213ENST00000480658 VCANP13611 3396 aa12.84□□□□□ -0.35
CCM2-213ENST00000480658 CUL9Q8IWT3 2517 aa12.84□□□□□ -0.35
CCM2-213ENST00000480658 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.83□□□□□ -0.36
CCM2-213ENST00000480658 IGKV6-21A0A0C4DH24 114 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 ZNF862O60290 1169 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 MAFO75444 373 aaPredicted RBP12.83□□□□□ -0.36
CCM2-213ENST00000480658 EOMESO95936 686 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 BMP1P13497 986 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 DARSP14868 501 aaKnown RBP12.83□□□□□ -0.36
CCM2-213ENST00000480658 LAG3P18627 525 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 RAB27AP51159 221 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 CLCN3P51790 818 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 EPHA7Q15375 998 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 ME3Q16798 604 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 SPOUT1Q5T280 376 aaKnown RBP12.83□□□□□ -0.36
CCM2-213ENST00000480658 FAM228AQ86W67 206 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 C4orf19Q8IY42 314 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 LINC01599Q8WXQ3 324 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 CCDC43Q96MW1 224 aaKnown RBP12.83□□□□□ -0.36
CCM2-213ENST00000480658 LARP6Q9BRS8 491 aaKnown RBP12.83□□□□□ -0.36
CCM2-213ENST00000480658 TRAIPQ9BWF2 469 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 C1QTNF1Q9BXJ1 281 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 TMEM117Q9H0C3 514 aa12.83□□□□□ -0.36
CCM2-213ENST00000480658 ZSWIM4Q9H7M6 989 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms