RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	MGAT3	Q09327	533 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	TBC1D8B	Q0IIM8	1120 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	TCTN1	Q2MV58	587 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	HABP4	Q5JVS0	413 aa	Known RBP	11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	EFCAB12	Q6NXP0	572 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	PSRC1	Q6PGN9	363 aa	Predicted RBP	11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	POTEG	Q6S5H5	508 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	DTHD1	Q6ZMT9	781 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	CATSPER3	Q86XQ3	398 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	C4orf19	Q8IY42	314 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	RPUSD2	Q8IZ73	545 aa	Known RBP	11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	KIAA0319L	Q8IZA0	1049 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	ERMN	Q8TAM6	284 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	SNX29	Q8TEQ0	813 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	ZNF668	Q96K58	619 aa	Predicted RBP	11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	CEP170P1	Q96L14	293 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	NIFK	Q9BYG3	293 aa	Known RBP	11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	SUGCT	Q9HAC7	445 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	CYP26B1	Q9NR63	512 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	RYDEN	Q9NUL5	291 aa	Known RBP	11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	CXXC1	Q9P0U4	656 aa	Predicted RBP	11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	GINS2	Q9Y248	185 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095	CDY2A	Q9Y6F7	541 aa		11.49	□□□□□ -0.57
HDAC6-222	ENST00000478095		M0QZ92	97 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	SNPH	O15079	494 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	MAGEB2	O15479	319 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	F13A1	P00488	732 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	PFKM	P08237	780 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	ZSCAN22	P10073	491 aa	Predicted RBP	11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	GHR	P10912	638 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	CCT6A	P40227	531 aa	Known RBP	11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	DRP2	Q13474	957 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	ECM1	Q16610	540 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	XKR9	Q5GH70	373 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	HAUS3	Q68CZ6	603 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	RPAIN	Q86UA6	219 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	IGSF22	Q8N9C0	903 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	PIGO	Q8TEQ8	1089 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	CCDC43	Q96MW1	224 aa	Known RBP	11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	USP28	Q96RU2	1077 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	CEP89	Q96ST8	783 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	RAB34	Q9BZG1	259 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	DAXX	Q9UER7	740 aa	Predicted RBP	11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	AKT3	Q9Y243	479 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095	TRPV2	Q9Y5S1	764 aa		11.48	□□□□□ -0.57
HDAC6-222	ENST00000478095		A0A1W2PPC1	479 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	LYPLA2	O95372	231 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	CXCL10	P02778	98 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	RPA1	P27694	616 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	TMOD1	P28289	359 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	MARCKS	P29966	332 aa	Predicted RBP	11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	POLG	P54098	1239 aa	Predicted RBP	11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	GRIN1	Q05586	938 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	PDIA5	Q14554	519 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	PTPA	Q15257	358 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	ZRSR1	Q15695	479 aa	Known RBP	11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	KIZ	Q2M2Z5	673 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	FAM26D	Q5JW98	314 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	IER5	Q5VY09	327 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	OTUD6A	Q7L8S5	288 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	LINC01465	Q8N7H1	131 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	DBF4B	Q8NFT6	615 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	MAP7D2	Q96T17	732 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	POLR3C	Q9BUI4	534 aa	Predicted RBP	11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	CELF4	Q9BZC1	486 aa	Known RBP	11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	CDHR5	Q9HBB8	845 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	TUFT1	Q9NNX1	390 aa		11.47	□□□□□ -0.57
HDAC6-222	ENST00000478095	SOX1	O00570	391 aa	Predicted RBP	11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	USO1	O60763	962 aa	Known RBP	11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	MAF	O75444	373 aa	Predicted RBP	11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	PARN	O95453	639 aa	Known RBP	11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	BMP15	O95972	392 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	ACTN1	P12814	892 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	RARRES1	P49788	294 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	LPIN1	Q14693	890 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	EMC2	Q15006	297 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	FBXO47	Q5MNV8	452 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	KRT79	Q5XKE5	535 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	ARL6IP4	Q66PJ3	421 aa	Known RBP	11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	FAM109B	Q6ICB4	259 aa	Predicted RBP	11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	CNKSR3	Q6P9H4	555 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	NME8	Q8N427	588 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	TMEM40	Q8WWA1	233 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	SLC7A3	Q8WY07	619 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	HERVK_113	Q902F9	699 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	TMEM143	Q96AN5	459 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	SCLT1	Q96NL6	688 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	PLIN2	Q99541	437 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	OSMR	Q99650	979 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	MMTAG2	Q9BU76	263 aa	Known RBP	11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	IFIH1	Q9BYX4	1025 aa	Known RBP	11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	DDX19A	Q9NUU7	478 aa	Known RBP	11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	TFIP11	Q9UBB9	837 aa	Known RBP	11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	KIAA1024	Q9UPX6	916 aa		11.46	□□□□□ -0.57
HDAC6-222	ENST00000478095	LAMA3	Q16787	3333 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	IGKV6-21	A0A0C4DH24	114 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	GRXCR1	A8MXD5	290 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	RPLP2	P05387	115 aa	Known RBP	11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	CD52	P31358	61 aa		11.45	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms