RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CYP3A7P24462 503 aa17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 SFNP31947 248 aa17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 SSTR3P32745 418 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 CLCN3P51790 818 aa17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 PRKCEQ02156 737 aa17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 COL19A1Q14993 1142 aa17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 KIZQ2M2Z5 673 aa17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 LETM2Q2VYF4 491 aa17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 MIER3Q7Z3K6 550 aa17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 RTN4RL1Q86UN2 441 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 NECAB1Q8N987 351 aa17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 PABPC5Q96DU9 382 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 PHF20Q9BVI0 1012 aa17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 RC3H2Q9HBD1 1191 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 ORC3Q9UBD5 711 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 DDX25Q9UHL0 483 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 HCN4Q9Y3Q4 1203 aa17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 NOC2LQ9Y3T9 749 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-205ENST00000472524 C5orf67F2Z3F1 127 aa17.72■□□□□ 0.43
CCDC88B-205ENST00000472524 PSMD10O75832 226 aa17.72■□□□□ 0.43
CCDC88B-205ENST00000472524 LARGE1O95461 756 aa17.72■□□□□ 0.43
CCDC88B-205ENST00000472524 BMPR1AP36894 532 aa17.72■□□□□ 0.43
CCDC88B-205ENST00000472524 BTG3Q14201 252 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-205ENST00000472524 NPAS4Q8IUM7 802 aa17.72■□□□□ 0.43
CCDC88B-205ENST00000472524 TMEM40Q8WWA1 233 aa17.72■□□□□ 0.43
CCDC88B-205ENST00000472524 OSMRQ99650 979 aa17.72■□□□□ 0.43
CCDC88B-205ENST00000472524 TMX1Q9H3N1 280 aa17.72■□□□□ 0.43
CCDC88B-205ENST00000472524 ERVK-5Q9HDB9 667 aa17.72■□□□□ 0.43
CCDC88B-205ENST00000472524 NRBP2Q9NSY0 501 aa17.72■□□□□ 0.43
CCDC88B-205ENST00000472524 AKT3Q9Y243 479 aa17.72■□□□□ 0.43
CCDC88B-205ENST00000472524 MAGEB2O15479 319 aa17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 SLC37A4O43826 429 aa17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 DGKIO75912 1065 aa17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 CSPG5O95196 566 aa17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 ME3Q16798 604 aa17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 PUS10Q3MIT2 529 aaKnown RBP17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 PAN2Q504Q3 1202 aaKnown RBP17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 EFCAB12Q6NXP0 572 aa17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 MOXD1Q6UVY6 613 aa17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 LRRC71Q8N4P6 559 aa17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 ETNPPLQ8TBG4 499 aa17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 OXER1Q8TDS5 423 aa17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 ZNF689Q96CS4 500 aaPredicted RBP17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 MBOAT7Q96N66 472 aa17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 C11orf84Q9BUA3 381 aaPredicted RBP17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 CLDND1Q9NY35 253 aa17.71■□□□□ 0.43
CCDC88B-205ENST00000472524 PLXNA4Q9HCM2 1894 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 MGEA5O60502 916 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 EIF5BO60841 1220 aaKnown RBP17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 SEC24BO95487 1268 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 STAG3L1P0CL83 205 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 NEK4P51957 841 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 CRYBB1P53674 252 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 PIK3AP1Q6ZUJ8 805 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 NEK8Q86SG6 692 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 FAM228AQ86W67 206 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 RDM1Q8NG50 284 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 WASF1Q92558 559 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 CLP1Q92989 425 aaKnown RBP17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 GTF3C6Q969F1 213 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 MAP7D2Q96T17 732 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 SEPT9Q9UHD8 586 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 LRFN2Q9ULH4 789 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 ST3GAL5Q9UNP4 418 aa17.7■□□□□ 0.42
CCDC88B-205ENST00000472524 DENND3A2RUS2 1198 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 GPR32O75388 356 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 RB1P06400 928 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 TMOD1P28289 359 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 LTBRP36941 435 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 GATMP50440 423 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 FOSBP53539 338 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 NLRP11P59045 1033 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 HYAL1Q12794 435 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 MTERF2Q49AM1 385 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 ODR4Q5SWX8 454 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 ZNF668Q96K58 619 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 ADAM2Q99965 735 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 RWDD3Q9Y3V2 267 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 ARIH1Q9Y4X5 557 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 ARID2Q68CP9 1835 aa17.69■□□□□ 0.42
CCDC88B-205ENST00000472524 TMEM150BA6NC51 233 aa17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 GPR182O15218 404 aa17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 CCNT1O60563 726 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 FDPSP14324 419 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 GTF2F1P35269 517 aaKnown RBP eCLIP17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 SARSP49591 514 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 ZP2Q05996 745 aa17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 DLX2Q07687 328 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 TBC1D8BQ0IIM8 1120 aa17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 CLUL1Q15846 466 aa17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 CTC1Q2NKJ3 1217 aa17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 B3GNT9Q6UX72 402 aa17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 CMTR2Q8IYT2 770 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 LINC01465Q8N7H1 131 aa17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 SCLT1Q96NL6 688 aa17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 SH2D3AQ9BRG2 576 aa17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 LMAN2LQ9H0V9 348 aa17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 ALG13Q9NP73 1137 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 PCDHB7Q9Y5E2 793 aa17.68■□□□□ 0.42
CCDC88B-205ENST00000472524 MRPL42Q9Y6G3 142 aaKnown RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms