RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 GNA14O95837 355 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 TPM2P07951 284 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 TXNP10599 105 aaKnown RBP10.35□□□□□ -0.75
VPS52-216ENST00000471309 ATP4AP20648 1035 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 MSNP26038 577 aaKnown RBP10.35□□□□□ -0.75
VPS52-216ENST00000471309 NMT1P30419 496 aaKnown RBP10.35□□□□□ -0.75
VPS52-216ENST00000471309 HOXD13P35453 343 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 TCF7P36402 384 aaPredicted RBP10.35□□□□□ -0.75
VPS52-216ENST00000471309 TM4SF4P48230 202 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 NPEPPSP55786 919 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 MARSP56192 900 aaKnown RBP10.35□□□□□ -0.75
VPS52-216ENST00000471309 RTP1P59025 263 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 TBX2Q13207 712 aaPredicted RBP10.35□□□□□ -0.75
VPS52-216ENST00000471309 IRF5Q13568 498 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 NFIL3Q16649 462 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 MORN1Q5T089 497 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 TAPT1Q6NXT6 567 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 ZNF720Q7Z2F6 126 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 DPP9Q86TI2 863 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 LRRC8AQ8IWT6 810 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 MCPH1Q8NEM0 835 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 CACTINQ8WUQ7 758 aaKnown RBP10.35□□□□□ -0.75
VPS52-216ENST00000471309 KIFAP3Q92845 792 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 EMID1Q96A84 441 aaPredicted RBP10.35□□□□□ -0.75
VPS52-216ENST00000471309 FAM167AQ96KS9 214 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 CEP170P1Q96L14 293 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 PCYT2Q99447 389 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 GPR20Q99678 358 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 TUBGCP2Q9BSJ2 902 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 NIFKQ9BYG3 293 aaKnown RBP10.35□□□□□ -0.75
VPS52-216ENST00000471309 ATP6V0A4Q9HBG4 840 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 ZFYVE28Q9HCC9 887 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 PPME1Q9Y570 386 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 PCDHB13Q9Y5F0 798 aa10.35□□□□□ -0.75
VPS52-216ENST00000471309 MYH9P35579 1960 aaKnown RBP10.35□□□□□ -0.75
VPS52-216ENST00000471309 A0A1W2PQC6 194 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 SFI1A8K8P3 1242 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 K7ENM7 598 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 NOP56O00567 594 aaKnown RBP10.34□□□□□ -0.75
VPS52-216ENST00000471309 SLC16A3O15427 465 aaKnown RBP10.34□□□□□ -0.75
VPS52-216ENST00000471309 TEX33O43247 280 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 PRPF6O94906 941 aaKnown RBP10.34□□□□□ -0.75
VPS52-216ENST00000471309 HOXC6P09630 235 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 HSPA6P17066 643 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 SFPQP23246 707 aaKnown RBP eCLIP10.34□□□□□ -0.75
VPS52-216ENST00000471309 NR2F2P24468 414 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 RFC5P40937 340 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 MTIF2P46199 727 aaKnown RBP10.34□□□□□ -0.75
VPS52-216ENST00000471309 SLC26A2P50443 739 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 DNM2P50570 870 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 STAT5BP51692 787 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 NCKAP1LP55160 1127 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 MAP2K5Q13163 448 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 MAN2A1Q16706 1144 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 ARMCX5Q6P1M9 558 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 PLPPR4Q7Z2D5 763 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 DHX37Q8IY37 1157 aaKnown RBP10.34□□□□□ -0.75
VPS52-216ENST00000471309 GOLGA5Q8TBA6 731 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 SPIRE2Q8WWL2 714 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 HVCN1Q96D96 273 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 ZNF830Q96NB3 372 aaPredicted RBP10.34□□□□□ -0.75
VPS52-216ENST00000471309 SH2D3AQ9BRG2 576 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 TINF2Q9BSI4 451 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 VPS16Q9H269 839 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 ABHD16BQ9H3Z7 469 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 AZI2Q9H6S1 392 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 PDLIM7Q9NR12 457 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 MGAMO43451 1857 aa10.34□□□□□ -0.75
VPS52-216ENST00000471309 CETN3O15182 167 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 TGFB1I1O43294 461 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 SNAI1O95863 264 aaPredicted RBP10.33□□□□□ -0.76
VPS52-216ENST00000471309 GH1P01241 217 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 NR3C1P04150 777 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 PRKCSHP14314 528 aaPredicted RBP10.33□□□□□ -0.76
VPS52-216ENST00000471309 SCP2P22307 547 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 RPL13P26373 211 aaKnown RBP10.33□□□□□ -0.76
VPS52-216ENST00000471309 ABCD1P33897 745 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 POLGP54098 1239 aaPredicted RBP10.33□□□□□ -0.76
VPS52-216ENST00000471309 CCZ1BP86790 482 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 CCZ1P86791 482 aaPredicted RBP10.33□□□□□ -0.76
VPS52-216ENST00000471309 ARHGAP1Q07960 439 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 DMP1Q13316 513 aaPredicted RBP10.33□□□□□ -0.76
VPS52-216ENST00000471309 CRHR2Q13324 411 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 LAMC2Q13753 1193 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 TRIM14Q14142 442 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 EMC2Q15006 297 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 TARBP2Q15633 366 aaKnown RBP10.33□□□□□ -0.76
VPS52-216ENST00000471309 HSDL1Q3SXM5 330 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 MTERF2Q49AM1 385 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 ZC2HC1CQ53FD0 456 aaPredicted RBP10.33□□□□□ -0.76
VPS52-216ENST00000471309 MIIPQ5JXC2 388 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 FAM102BQ5T8I3 360 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 MAEAQ7L5Y9 396 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 HS2ST1Q7LGA3 356 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 CCDC112Q8NEF3 446 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 NPLOC4Q8TAT6 608 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 TMEM174Q8WUU8 243 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 SOCS4Q8WXH5 440 aa10.33□□□□□ -0.76
VPS52-216ENST00000471309 BBXQ8WY36 941 aaPredicted RBP10.33□□□□□ -0.76
VPS52-216ENST00000471309 USP6NLQ92738 828 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms