RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 MAP3K21Q5TCX8 1036 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 KLHDC7AQ5VTJ3 777 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 GALNT17Q6IS24 598 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 LRIG3Q6UXM1 1119 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 TAX1BP1Q86VP1 789 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 NLRP14Q86W24 1093 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 MAGEC3Q8TD91 643 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 SOCS4Q8WXH5 440 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 PIK3R5Q8WYR1 880 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 C12orf42Q96LP6 360 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 AK8Q96MA6 479 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 CCDC43Q96MW1 224 aaKnown RBP10.5□□□□□ -0.73
HDAC3-205ENST00000469550 CCT8L2Q96SF2 557 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 RBM12Q9NTZ6 932 aaKnown RBP10.5□□□□□ -0.73
HDAC3-205ENST00000469550 PCDHA4Q9UN74 947 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 FRMPD3Q5JV73 1810 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 USP17L10C9JJH3 530 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 M0R2N6 131 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 MYO1FO00160 1098 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 AKR1B10O60218 316 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 FGFR1OPO95684 399 aaKnown RBP10.5□□□□□ -0.73
HDAC3-205ENST00000469550 KRT14P02533 472 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 MATR3P43243 847 aaKnown RBP eCLIP10.5□□□□□ -0.73
HDAC3-205ENST00000469550 PREPLQ4J6C6 727 aaPredicted RBP10.5□□□□□ -0.73
HDAC3-205ENST00000469550 VWA3BQ502W6 1294 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 TTC19Q6DKK2 380 aaPredicted RBP10.5□□□□□ -0.73
HDAC3-205ENST00000469550 CENPPQ6IPU0 288 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 TYW1BQ6NUM6 668 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 TATDN1Q6P1N9 297 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 FOXR2Q6PJQ5 311 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 NECAB2Q7Z6G3 386 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 MIGA1Q8NAN2 632 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 DAGLBQ8NCG7 672 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 MYCBPAPQ8TBZ2 947 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 P2RX7Q99572 595 aaKnown RBP10.5□□□□□ -0.73
HDAC3-205ENST00000469550 RIOK1Q9BRS2 568 aaKnown RBP10.5□□□□□ -0.73
HDAC3-205ENST00000469550 TRIM9Q9C026 710 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.5□□□□□ -0.73
HDAC3-205ENST00000469550 GLI1P08151 1106 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 PLEKP08567 350 aaPredicted RBP10.49□□□□□ -0.73
HDAC3-205ENST00000469550 MAPK4P31152 587 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 KIF5BP33176 963 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 HSPA9P38646 679 aaKnown RBP10.49□□□□□ -0.73
HDAC3-205ENST00000469550 ATP1A2P50993 1020 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 AMPD3Q01432 767 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 ITGB3BPQ13352 177 aaPredicted RBP10.49□□□□□ -0.73
HDAC3-205ENST00000469550 CCDC40Q4G0X9 1142 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 WLSQ5T9L3 541 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 USP17L2Q6R6M4 530 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 CCDC50Q8IVM0 306 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 SH2D3CQ8N5H7 860 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 GPRC5AQ8NFJ5 357 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 SDR42E1Q8WUS8 393 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 USP6NLQ92738 828 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 SYN2Q92777 582 aaPredicted RBP10.49□□□□□ -0.73
HDAC3-205ENST00000469550 NUCKS1Q9H1E3 243 aaKnown RBP10.49□□□□□ -0.73
HDAC3-205ENST00000469550 NDST4Q9H3R1 872 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 RABEP2Q9H5N1 569 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 HMX1Q9NP08 348 aaPredicted RBP10.49□□□□□ -0.73
HDAC3-205ENST00000469550 KLC4Q9NSK0 619 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 CEP83Q9Y592 693 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 ZNF236Q9UL36 1845 aa10.49□□□□□ -0.73
HDAC3-205ENST00000469550 CES2O00748 559 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 EVI5O60447 810 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 HEXIM1O94992 359 aaKnown RBP10.48□□□□□ -0.73
HDAC3-205ENST00000469550 MYBP10242 640 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 RDXP35241 583 aaKnown RBP10.48□□□□□ -0.73
HDAC3-205ENST00000469550 CARSP49589 748 aaKnown RBP10.48□□□□□ -0.73
HDAC3-205ENST00000469550 MNX1P50219 401 aaPredicted RBP10.48□□□□□ -0.73
HDAC3-205ENST00000469550 GUCY1A3Q02108 690 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 PDE4DQ08499 809 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 NEDD9Q14511 834 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 CDC37Q16543 378 aaPredicted RBP10.48□□□□□ -0.73
HDAC3-205ENST00000469550 MAN2A1Q16706 1144 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 KCTD16Q68DU8 428 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 CNNM4Q6P4Q7 775 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 RASSF8Q8NHQ8 419 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 TRIB2Q92519 343 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 PAWRQ96IZ0 340 aaKnown RBP10.48□□□□□ -0.73
HDAC3-205ENST00000469550 HINFPQ9BQA5 517 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 TMBIM4Q9HC24 238 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 EPB41L5Q9HCM4 733 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 TXNRD2Q9NNW7 524 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 LUC7LQ9NQ29 371 aaKnown RBP10.48□□□□□ -0.73
HDAC3-205ENST00000469550 PLCB1Q9NQ66 1216 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 EMILIN3Q9NT22 766 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 RBPJLQ9UBG7 517 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 OGDHLQ9ULD0 1010 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 NFU1Q9UMS0 254 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 A0A0G2JMZ2 1700 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 GDF11O95390 407 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 FAM153BP0C7A2 387 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 CXCR5P32302 372 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 DYNLL1P63167 89 aaKnown RBP10.48□□□□□ -0.73
HDAC3-205ENST00000469550 STK4Q13043 487 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 SHROOM1Q2M3G4 852 aaPredicted RBP10.48□□□□□ -0.73
HDAC3-205ENST00000469550 FAM153CQ494X1 144 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 CCDC13Q8IYE1 715 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 BAP1Q92560 729 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 P3H4Q92791 437 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms