RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 UBA1P22314 1058 aaKnown RBP6.17□□□□□ -1.42
PTPN4-209ENST00000469511 GRM5P41594 1212 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 ATP1A2P50993 1020 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 USP4Q13107 963 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 CDC37Q16543 378 aaPredicted RBP6.17□□□□□ -1.42
PTPN4-209ENST00000469511 INTS6LQ5JSJ4 861 aaKnown RBP6.17□□□□□ -1.42
PTPN4-209ENST00000469511 RRP12Q5JTH9 1297 aaKnown RBP6.17□□□□□ -1.42
PTPN4-209ENST00000469511 CELF3Q5SZQ8 465 aaKnown RBP6.17□□□□□ -1.42
PTPN4-209ENST00000469511 ARHGEF16Q5VV41 709 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 LLGL2Q6P1M3 1020 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 DGLUCYQ7Z3D6 616 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 ZNF598Q86UK7 904 aaKnown RBP6.17□□□□□ -1.42
PTPN4-209ENST00000469511 RGS22Q8NE09 1264 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 OTUD7AQ8TE49 926 aaPredicted RBP6.17□□□□□ -1.42
PTPN4-209ENST00000469511 NSUN6Q8TEA1 469 aaKnown RBP6.17□□□□□ -1.42
PTPN4-209ENST00000469511 MRGPRX2Q96LB1 330 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 ZKSCAN3Q9BRR0 538 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 KATNAL1Q9BW62 490 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 IRF2BPLQ9H1B7 796 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 POMKQ9H5K3 350 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 TUT1Q9H6E5 874 aaKnown RBP6.17□□□□□ -1.42
PTPN4-209ENST00000469511 TLE6Q9H808 572 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 ZNF287Q9HBT7 754 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 VAT1LQ9HCJ6 419 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 PXMP2Q9NR77 195 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 ECHDC1Q9NTX5 307 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 ZMIZ1Q9ULJ6 1067 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 V9GY48 417 aaPredicted RBP6.17□□□□□ -1.42
PTPN4-209ENST00000469511 USP24Q9UPU5 2620 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 WDR19Q8NEZ3 1342 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 DENND4AQ7Z401 1863 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 CHD6Q8TD26 2715 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 COL4A3Q01955 1670 aa6.17□□□□□ -1.42
PTPN4-209ENST00000469511 HIDE1A8MVS5 230 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 PPP1R11O60927 126 aaPredicted RBP6.16□□□□□ -1.42
PTPN4-209ENST00000469511 EIF3JO75822 258 aaKnown RBP6.16□□□□□ -1.42
PTPN4-209ENST00000469511 ADH1CP00326 375 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 CFBP00751 764 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 FGRP09769 529 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 ATF7P17544 494 aaPredicted RBP6.16□□□□□ -1.42
PTPN4-209ENST00000469511 GNAT2P19087 354 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 HOXA13P31271 388 aaPredicted RBP6.16□□□□□ -1.42
PTPN4-209ENST00000469511 CD52P31358 61 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 TECP42680 631 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 ARHGAP4P98171 946 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 DHX9Q08211 1270 aaKnown RBP6.16□□□□□ -1.42
PTPN4-209ENST00000469511 DUSP6Q16828 381 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 SLC35G1Q2M3R5 365 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 QRICH1Q2TAL8 776 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 CRTC2Q53ET0 693 aaPredicted RBP6.16□□□□□ -1.42
PTPN4-209ENST00000469511 ZMYM1Q5SVZ6 1142 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 UTP14CQ5TAP6 766 aaKnown RBP6.16□□□□□ -1.42
PTPN4-209ENST00000469511 ANKRD54Q6NXT1 300 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 ADGRF4Q8IZF3 695 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 KCTD17Q8N5Z5 321 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 MICAL1Q8TDZ2 1067 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 LMBR1Q8WVP7 490 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 P2RX5Q93086 422 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 IWS1Q96ST2 819 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 PDCD2LQ9BRP1 358 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 PLVAPQ9BX97 442 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 TOMM22Q9NS69 142 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 ZBTB40Q9NUA8 1239 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 NOVA2Q9UNW9 492 aaKnown RBP6.16□□□□□ -1.42
PTPN4-209ENST00000469511 PCDHB11Q9Y5F2 797 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 R4GN57 208 aa6.16□□□□□ -1.42
PTPN4-209ENST00000469511 DOCK8Q8NF50 2099 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 ERVH48-1M5A8F1 160 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 ORC4O43929 436 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 FSHRP23945 695 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 HAND2P61296 217 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 CLDN10P78369 228 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 SP4Q02446 784 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 TMEM62Q0P6H9 643 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 NR5A1Q13285 461 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 ARID5BQ14865 1188 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 PGM5Q15124 567 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 OXLD1Q5BKU9 147 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 FBXO47Q5MNV8 452 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 MARCH8Q5T0T0 291 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 FAM102BQ5T8I3 360 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 VSIG10LQ86VR7 867 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 C12orf76Q8N812 135 aaPredicted RBP6.15□□□□□ -1.42
PTPN4-209ENST00000469511 FLCNQ8NFG4 579 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 DNAJB3Q8WWF6 145 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 APBB2Q92870 758 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 MPHOSPH6Q99547 160 aaKnown RBP6.15□□□□□ -1.42
PTPN4-209ENST00000469511 GPR20Q99678 358 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 NACAP1Q9BZK3 213 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 LRRCC1Q9C099 1032 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 TMX1Q9H3N1 280 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 JMJD4Q9H9V9 463 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 MLXIPQ9HAP2 919 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 DNAAF2Q9NVR5 837 aaKnown RBP6.15□□□□□ -1.42
PTPN4-209ENST00000469511 ANAPC4Q9UJX5 808 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 SORCS3Q9UPU3 1222 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 RWDD3Q9Y3V2 267 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 CDY2AQ9Y6F7 541 aa6.15□□□□□ -1.42
PTPN4-209ENST00000469511 ABCB11O95342 1321 aa6.15□□□□□ -1.43
PTPN4-209ENST00000469511 B4DLN1 442 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms