RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 RGS18Q9NS28 235 aa18.72■□□□□ 0.59
CCDC28B-204ENST00000469003 C1orf112Q9NSG2 853 aa18.72■□□□□ 0.59
CCDC28B-204ENST00000469003 NRBP2Q9NSY0 501 aa18.72■□□□□ 0.59
CCDC28B-204ENST00000469003 RNF216Q9NWF9 866 aaPredicted RBP18.72■□□□□ 0.59
CCDC28B-204ENST00000469003 PCDHB7Q9Y5E2 793 aa18.72■□□□□ 0.59
CCDC28B-204ENST00000469003 CYP3A7-CYP3A51PA0A087WV96 503 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 DENND3A2RUS2 1198 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 VTNP04004 478 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 OATP04181 439 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 CYP3A7P24462 503 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 CLCN3P51790 818 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 JAK3P52333 1124 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 PRKCEQ02156 737 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 PAN2Q504Q3 1202 aaKnown RBP18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 PTCRAQ6ISU1 281 aaPredicted RBP18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 FAM228AQ86W67 206 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 LINC01465Q8N7H1 131 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 RDM1Q8NG50 284 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 UNC45AQ9H3U1 944 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 PLAGL2Q9UPG8 496 aa18.71■□□□□ 0.59
CCDC28B-204ENST00000469003 GRXCR2A6NFK2 248 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 C9IYK1 514 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 H3BQ06 376 aaPredicted RBP18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 CHMP2AO43633 222 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 PSMD10O75832 226 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 TMOD1P28289 359 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 GATMP50440 423 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 NPY5RQ15761 445 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 FNDC1Q4ZHG4 1894 aaPredicted RBP18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 EFCAB12Q6NXP0 572 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 MOXD1Q6UVY6 613 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 SLC24A5Q71RS6 500 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 FAM178BQ8IXR5 827 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 ZNF710Q8N1W2 664 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 MBOAT7Q96N66 472 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 AIFM3Q96NN9 605 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 MAP7D2Q96T17 732 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 ALG13Q9NP73 1137 aaKnown RBP18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 CLDND1Q9NY35 253 aa18.7■□□□□ 0.58
CCDC28B-204ENST00000469003 MYO7AQ13402 2215 aa18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 FAM86C2PA6NEL3 165 aa18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 TDP2O95551 362 aa18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 ITGB1P05556 798 aa18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 IL9P15248 144 aa18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 IBSPP21815 317 aaPredicted RBP18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 NLRP11P59045 1033 aaKnown RBP18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 UGCGQ16739 394 aa18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 CTC1Q2NKJ3 1217 aa18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 EP400NLQ6ZTU2 488 aa18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 MIER3Q7Z3K6 550 aa18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 LRRC71Q8N4P6 559 aa18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 GJA10Q969M2 543 aa18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 AKT3Q9Y243 479 aa18.69■□□□□ 0.58
CCDC28B-204ENST00000469003 GPR37L1O60883 481 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 CDKL5O76039 1030 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 FAM189BP81408 668 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 SCRN1Q12765 414 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 HYAL1Q12794 435 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 CAMK1Q14012 370 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 DSC3Q14574 896 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 NONOQ15233 471 aaKnown RBP eCLIP18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 B3GNT9Q6UX72 402 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 KRT25Q7Z3Z0 450 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 KLHL23Q8NBE8 558 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 ETNPPLQ8TBG4 499 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 SPPL3Q8TCT6 385 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 ADAMTS10Q9H324 1103 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 CD320Q9NPF0 282 aa18.68■□□□□ 0.58
CCDC28B-204ENST00000469003 TBKBP1A7MCY6 615 aa18.67■□□□□ 0.58
CCDC28B-204ENST00000469003 LTBRP36941 435 aa18.67■□□□□ 0.58
CCDC28B-204ENST00000469003 TARBP2Q15633 366 aaKnown RBP18.67■□□□□ 0.58
CCDC28B-204ENST00000469003 SLKQ9H2G2 1235 aaPredicted RBP18.67■□□□□ 0.58
CCDC28B-204ENST00000469003 ELAC1Q9H777 363 aaKnown RBP18.67■□□□□ 0.58
CCDC28B-204ENST00000469003 TMEM161AQ9NX61 479 aa18.67■□□□□ 0.58
CCDC28B-204ENST00000469003 KCNJ14Q9UNX9 436 aa18.67■□□□□ 0.58
CCDC28B-204ENST00000469003 FAM50BQ9Y247 325 aa18.67■□□□□ 0.58
CCDC28B-204ENST00000469003 STK36Q9NRP7 1315 aa18.67■□□□□ 0.58
CCDC28B-204ENST00000469003 PFKFB2O60825 505 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 CSPG5O95196 566 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 EIF4BP23588 611 aaKnown RBP18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 DNAJB1P25685 340 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 TBC1D8BQ0IIM8 1120 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 INF2Q27J81 1249 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 FAM102BQ5T8I3 360 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 GJD3Q8N144 294 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 KHSRPQ92945 711 aaKnown RBP eCLIP18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 PPP2R3CQ969Q6 453 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 PHF20Q9BVI0 1012 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 NIFKQ9BYG3 293 aaKnown RBP18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 ATP6V0A4Q9HBG4 840 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 C11orf16Q9NQ32 467 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 AAASQ9NRG9 546 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 PPP4R2Q9NY27 417 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 DDX25Q9UHL0 483 aaKnown RBP18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 TPCN1Q9ULQ1 816 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 PLXNA4Q9HCM2 1894 aa18.66■□□□□ 0.58
CCDC28B-204ENST00000469003 STBD1O95210 358 aa18.65■□□□□ 0.58
CCDC28B-204ENST00000469003 XBP1P17861 261 aa18.65■□□□□ 0.58
CCDC28B-204ENST00000469003 GPC3P51654 580 aa18.65■□□□□ 0.58
CCDC28B-204ENST00000469003 ANAPC15P60006 121 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms