RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CCAR1Q8IX12 1150 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-210ENST00000468534 SCYL1Q96KG9 808 aa6.17□□□□□ -1.42
CCDC88A-210ENST00000468534 MENTQ9BUN1 341 aa6.17□□□□□ -1.42
CCDC88A-210ENST00000468534 PLA2G12BQ9BX93 195 aa6.17□□□□□ -1.42
CCDC88A-210ENST00000468534 ZDHHC5Q9C0B5 715 aa6.17□□□□□ -1.42
CCDC88A-210ENST00000468534 NDOR1Q9UHB4 597 aa6.17□□□□□ -1.42
CCDC88A-210ENST00000468534 COMMD10Q9Y6G5 202 aa6.17□□□□□ -1.42
CCDC88A-210ENST00000468534 MATN2O00339 956 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 SCDO00767 359 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 GSTA4O15217 222 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 ARHGAP6O43182 974 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 MMEP08473 750 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 NAT1P18440 290 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 GABREP78334 506 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 DGCR2P98153 550 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 CD83Q01151 205 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 POLNQ7Z5Q5 900 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 FILIP1Q7Z7B0 1213 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 CCDC146Q8IYE0 955 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 SDR16C5Q8N3Y7 309 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 SENP7Q9BQF6 1050 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 PIF1Q9H611 641 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 GNL3LQ9NVN8 582 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 BTBD7Q9P203 1132 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 PUF60Q9UHX1 559 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 MRPS23Q9Y3D9 190 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 KDM2BQ8NHM5 1336 aa6.16□□□□□ -1.42
CCDC88A-210ENST00000468534 OVOL3O00110 214 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 CLASP2O75122 1294 aaKnown RBP6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 ECE1P42892 770 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 RHBDL3P58872 404 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 FAM193AP78312 1265 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 FHL2Q14192 279 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 PCOLCEQ15113 449 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 SEC23AQ15436 765 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 PLEKHG6Q3KR16 790 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 IGFL4Q6B9Z1 124 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 Q6ZSN1 163 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 C11orf96Q7Z7L8 435 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 RTKN2Q8IZC4 609 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 OR14K1Q8NGZ2 314 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 ZCRB1Q8TBF4 217 aaKnown RBP6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 EDAQ92838 391 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 DHRS4Q9BTZ2 278 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 AMNQ9BXJ7 453 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 FBXO10Q9UK96 956 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 FAM184BQ9ULE4 1060 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 COQ6Q9Y2Z9 468 aa6.15□□□□□ -1.42
CCDC88A-210ENST00000468534 MPIG6BO95866 241 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 MRE11P49959 708 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 MEOX1P50221 254 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 STAT5BP51692 787 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 HERVK_113P62684 666 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 TM4SF20Q53R12 229 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 CRB2Q5IJ48 1285 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 MIIPQ5JXC2 388 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 FSTL4Q6MZW2 842 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 USP30Q70CQ3 517 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 CXXC5Q7LFL8 322 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 AMOTL1Q8IY63 956 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 ZNF808Q8N4W9 903 aaPredicted RBP6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 HIPK4Q8NE63 616 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 ZNF503Q96F45 646 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 WNK4Q96J92 1243 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 BTBD2Q9BX70 525 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 CCDC113Q9H0I3 377 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 SLITRK6Q9H5Y7 841 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 SLC52A2Q9HAB3 445 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 SLC30A1Q9Y6M5 507 aa6.14□□□□□ -1.43
CCDC88A-210ENST00000468534 PRAMEF22A3QJZ6 481 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 WDHD1O75717 1129 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 ZNF202O95125 648 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 RASGRP1O95267 797 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 ATP2B1P20020 1258 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 BDNFP23560 247 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 CALRP27797 417 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 GTF2F1P35269 517 aaKnown RBP eCLIP6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 MSX2P35548 267 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 GYS2P54840 703 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 TBX4P57082 545 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 PTH1RQ03431 593 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 DUSP8Q13202 625 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 NFYCQ13952 458 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 EIF4HQ15056 248 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 STILQ15468 1287 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 LSM12Q3MHD2 195 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 C1orf210Q8IVY1 113 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 FTSJ3Q8IY81 847 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 CFHR4Q92496 578 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 ARMC5Q96C12 935 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 FAM89AQ96GI7 184 aa6.13□□□□□ -1.43
CCDC88A-210ENST00000468534 A0A0G2JNJ9 132 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 ANP32CO43423 234 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 APPP05067 770 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 C1SP09871 688 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 RPS19P39019 145 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 LACTBP83111 547 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 ABHD18Q0P651 414 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 FOXL1Q12952 345 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 MOGSQ13724 837 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms