RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 GPR32O75388 356 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 MAFO75444 373 aaPredicted RBP13.03□□□□□ -0.32
CUX1-207ENST00000465461 F13A1P00488 732 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 BECN1Q14457 450 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 PDIA5Q14554 519 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 PTPAQ15257 358 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 SPECC1Q5M775 1068 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 FBXO47Q5MNV8 452 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 RASIP1Q5U651 963 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 IER5Q5VY09 327 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 MAEAQ7L5Y9 396 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 OTUD6AQ7L8S5 288 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 KSR1Q8IVT5 923 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 ERMNQ8TAM6 284 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 NEK9Q8TD19 979 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 TMEM40Q8WWA1 233 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 TMEM143Q96AN5 459 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 OSMRQ99650 979 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 MMTAG2Q9BU76 263 aaKnown RBP13.03□□□□□ -0.32
CUX1-207ENST00000465461 POLR3CQ9BUI4 534 aaPredicted RBP13.03□□□□□ -0.32
CUX1-207ENST00000465461 ZSCAN16Q9H4T2 348 aaPredicted RBP13.03□□□□□ -0.32
CUX1-207ENST00000465461 AGO3Q9H9G7 860 aaKnown RBP13.03□□□□□ -0.32
CUX1-207ENST00000465461 TUFT1Q9NNX1 390 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 KIAA1024Q9UPX6 916 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 ZDHHC9Q9Y397 364 aa13.03□□□□□ -0.32
CUX1-207ENST00000465461 LOXHD1Q8IVV2 1947 aa13.02□□□□□ -0.32
CUX1-207ENST00000465461 IGKV6-21A0A0C4DH24 114 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 A0A1W2PPC1 479 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 M0QZ92 97 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 LYPLA2O95372 231 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 PFKMP08237 780 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 RPA1P27694 616 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 CD52P31358 61 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 RARRES1P49788 294 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 RABGGTBP53611 331 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 POLGP54098 1239 aaPredicted RBP13.02□□□□□ -0.33
CUX1-207ENST00000465461 NLRP11P59045 1033 aaKnown RBP13.02□□□□□ -0.33
CUX1-207ENST00000465461 PLEKHG4Q58EX7 1191 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 CNKSR3Q6P9H4 555 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.02□□□□□ -0.33
CUX1-207ENST00000465461 NME8Q8N427 588 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 CLIC6Q96NY7 704 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 POLD4Q9HCU8 107 aa13.02□□□□□ -0.33
CUX1-207ENST00000465461 DDX19AQ9NUU7 478 aaKnown RBP13.02□□□□□ -0.33
CUX1-207ENST00000465461 SUCLA2Q9P2R7 463 aaPredicted RBP13.02□□□□□ -0.33
CUX1-207ENST00000465461 NOC2LQ9Y3T9 749 aaKnown RBP13.02□□□□□ -0.33
CUX1-207ENST00000465461 E9PMD0 336 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 USO1O60763 962 aaKnown RBP13.01□□□□□ -0.33
CUX1-207ENST00000465461 CSDE1O75534 798 aaKnown RBP13.01□□□□□ -0.33
CUX1-207ENST00000465461 PARNO95453 639 aaKnown RBP13.01□□□□□ -0.33
CUX1-207ENST00000465461 ACTN1P12814 892 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 FGFR4P22455 802 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 TMOD1P28289 359 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 PBX2P40425 430 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 FXR1P51114 621 aaKnown RBP eCLIP13.01□□□□□ -0.33
CUX1-207ENST00000465461 DEFB103AP81534 67 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 EMC2Q15006 297 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 KRT79Q5XKE5 535 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 ARL6IP4Q66PJ3 421 aaKnown RBP13.01□□□□□ -0.33
CUX1-207ENST00000465461 HAUS3Q68CZ6 603 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 KCNK18Q7Z418 384 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 RHPN2Q8IUC4 686 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 PNMA5Q96PV4 448 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 NACC1Q96RE7 527 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 MAP7D2Q96T17 732 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 IFIH1Q9BYX4 1025 aaKnown RBP13.01□□□□□ -0.33
CUX1-207ENST00000465461 RAB34Q9BZG1 259 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 ADAMTS10Q9H324 1103 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 DHX33Q9H6R0 707 aaKnown RBP13.01□□□□□ -0.33
CUX1-207ENST00000465461 XPNPEP1Q9NQW7 623 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 ANKEF1Q9NU02 776 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 SLC4A7Q9Y6M7 1214 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 TRIOBPQ9H2D6 2365 aa13.01□□□□□ -0.33
CUX1-207ENST00000465461 ARID2Q68CP9 1835 aa13□□□□□ -0.33
CUX1-207ENST00000465461 A0A087WZ62 844 aa13□□□□□ -0.33
CUX1-207ENST00000465461 MYOGP15173 224 aa13□□□□□ -0.33
CUX1-207ENST00000465461 RFC5P40937 340 aa13□□□□□ -0.33
CUX1-207ENST00000465461 GPC3P51654 580 aa13□□□□□ -0.33
CUX1-207ENST00000465461 WDR5P61964 334 aaKnown RBP13□□□□□ -0.33
CUX1-207ENST00000465461 NFX1Q12986 1120 aaKnown RBP13□□□□□ -0.33
CUX1-207ENST00000465461 GRB10Q13322 594 aa13□□□□□ -0.33
CUX1-207ENST00000465461 IKBKEQ14164 716 aa13□□□□□ -0.33
CUX1-207ENST00000465461 LRIT3Q3SXY7 679 aa13□□□□□ -0.33
CUX1-207ENST00000465461 FAM117BQ6P1L5 589 aa13□□□□□ -0.33
CUX1-207ENST00000465461 TSHZ1Q6ZSZ6 1077 aa13□□□□□ -0.33
CUX1-207ENST00000465461 USP49Q70CQ1 688 aa13□□□□□ -0.33
CUX1-207ENST00000465461 NLRP7Q8WX94 980 aa13□□□□□ -0.33
CUX1-207ENST00000465461 SLC7A3Q8WY07 619 aa13□□□□□ -0.33
CUX1-207ENST00000465461 SEPT8Q92599 483 aa13□□□□□ -0.33
CUX1-207ENST00000465461 NLRP4Q96MN2 994 aa13□□□□□ -0.33
CUX1-207ENST00000465461 CCDC43Q96MW1 224 aaKnown RBP13□□□□□ -0.33
CUX1-207ENST00000465461 SCLT1Q96NL6 688 aa13□□□□□ -0.33
CUX1-207ENST00000465461 MTRQ99707 1265 aa13□□□□□ -0.33
CUX1-207ENST00000465461 FDXACB1Q9BRP7 624 aaPredicted RBP13□□□□□ -0.33
CUX1-207ENST00000465461 CSRNP2Q9H175 543 aa13□□□□□ -0.33
CUX1-207ENST00000465461 GPRC5CQ9NQ84 441 aa13□□□□□ -0.33
CUX1-207ENST00000465461 FBXO2Q9UK22 296 aaPredicted RBP13□□□□□ -0.33
CUX1-207ENST00000465461 PADI3Q9ULW8 664 aa13□□□□□ -0.33
CUX1-207ENST00000465461 MYH15Q9Y2K3 1946 aa13□□□□□ -0.33
CUX1-207ENST00000465461 KDM3AQ9Y4C1 1321 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms