RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 DNASE1L2Q92874 299 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 FGF14Q92915 247 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 KIFC2Q96AC6 838 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 PHF20Q9BVI0 1012 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 EMILIN2Q9BXX0 1053 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 DUSP15Q9H1R2 295 aaPredicted RBP3.15□□□□□ -1.91
USP40-211ENST00000464956 SLC38A10Q9HBR0 1119 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 GPRC5CQ9NQ84 441 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 C9orf78Q9NZ63 289 aaPredicted RBP3.15□□□□□ -1.91
USP40-211ENST00000464956 LRP2BPQ9P2M1 347 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 EVLQ9UI08 416 aaPredicted RBP3.15□□□□□ -1.91
USP40-211ENST00000464956 CDH7Q9ULB5 785 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 U3KPZ7 1027 aaPredicted RBP3.15□□□□□ -1.91
USP40-211ENST00000464956 DMXL2Q8TDJ6 3036 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 NOTCH2Q04721 2471 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 PHLPP2Q6ZVD8 1323 aa3.15□□□□□ -1.91
USP40-211ENST00000464956 TET1Q8NFU7 2136 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 NBEAQ8NFP9 2946 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 MYO7AQ13402 2215 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 PTPDC1A2A3K4 754 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 PATE3B3GLJ2 98 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 INPPL1O15357 1258 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 SUV39H1O43463 412 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 CHRNA1P02708 482 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 FDX1P10109 184 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 CHRNB1P11230 501 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 ALAS1P13196 640 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 SARSP49591 514 aaKnown RBP3.14□□□□□ -1.91
USP40-211ENST00000464956 ALDH5A1P51649 535 aaPredicted RBP3.14□□□□□ -1.91
USP40-211ENST00000464956 SEMG2Q02383 582 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 RNASELQ05823 741 aaKnown RBP3.14□□□□□ -1.91
USP40-211ENST00000464956 KCNH2Q12809 1159 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 PTGDRQ13258 359 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 FKBP5Q13451 457 aaPredicted RBP3.14□□□□□ -1.91
USP40-211ENST00000464956 GAS6Q14393 721 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 LPIN1Q14693 890 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 C2orf27AQ580R0 203 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 ARHGAP40Q5TG30 622 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 C1orf228Q6PIY5 440 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 AGMOQ6ZNB7 445 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 C11orf74Q86VG3 221 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 CLEC10AQ8IUN9 316 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 SPACA3Q8IXA5 215 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 VPS52Q8N1B4 723 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 SNIP1Q8TAD8 396 aaKnown RBP3.14□□□□□ -1.91
USP40-211ENST00000464956 SPATA20Q8TB22 786 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 TSC1Q92574 1164 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 TMEM169Q96HH4 297 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 TRERF1Q96PN7 1200 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 KXD1Q9BQD3 176 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 CSRNP2Q9H175 543 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 EHMT1Q9H9B1 1298 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 KANSL2Q9H9L4 492 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 MAN1C1Q9NR34 630 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 TMPRSS4Q9NRS4 437 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 CYP39A1Q9NYL5 469 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 KIAA1522Q9P206 1035 aaPredicted RBP3.14□□□□□ -1.91
USP40-211ENST00000464956 CEP126Q9P2H0 1117 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 DKK3Q9UBP4 350 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 IRAK3Q9Y616 596 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 TEX15Q9BXT5 2789 aa3.14□□□□□ -1.91
USP40-211ENST00000464956 COL5A1P20908 1838 aaPredicted RBP3.14□□□□□ -1.91
USP40-211ENST00000464956 UBR5O95071 2799 aaPredicted RBP3.13□□□□□ -1.91
USP40-211ENST00000464956 PTPRQQ9UMZ3 2332 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 DSPP15924 2871 aaKnown RBP3.13□□□□□ -1.91
USP40-211ENST00000464956 CARNS1A5YM72 827 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 EYA2O00167 538 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 HOXA2O43364 376 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 TLX3O43711 291 aaPredicted RBP3.13□□□□□ -1.91
USP40-211ENST00000464956 CYP2E1P05181 493 aaPredicted RBP3.13□□□□□ -1.91
USP40-211ENST00000464956 SMIM10L2AP0DMW4 78 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 SMIM10L2BP0DMW5 78 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 CTSAP10619 480 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 EEF2P13639 858 aaKnown RBP3.13□□□□□ -1.91
USP40-211ENST00000464956 ENGP17813 658 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 FSHRP23945 695 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 PBX3P40426 434 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 TMPOP42166 694 aaKnown RBP3.13□□□□□ -1.91
USP40-211ENST00000464956 DPP6P42658 865 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 PXNP49023 591 aaPredicted RBP3.13□□□□□ -1.91
USP40-211ENST00000464956 CLCN4P51793 760 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 POLGP54098 1239 aaPredicted RBP3.13□□□□□ -1.91
USP40-211ENST00000464956 ATP8B2P98198 1209 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 CCDC173Q0VFZ6 552 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 SLC14A1Q13336 389 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 CAMK2BQ13554 666 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 LAMC2Q13753 1193 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 HIC1Q14526 733 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 NAA30Q147X3 362 aaPredicted RBP3.13□□□□□ -1.91
USP40-211ENST00000464956 WTAPQ15007 396 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 DCAF6Q58WW2 860 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 DGKKQ5KSL6 1271 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 C6orf118Q5T5N4 469 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 ZNF787Q6DD87 383 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 TAF2Q6P1X5 1199 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 TBC1D9Q6ZT07 1266 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 FAM43BQ6ZT52 329 aaPredicted RBP3.13□□□□□ -1.91
USP40-211ENST00000464956 GLRX5Q86SX6 157 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 SIAH1Q8IUQ4 282 aa3.13□□□□□ -1.91
USP40-211ENST00000464956 ABI1Q8IZP0 508 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms