RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 CYP4A11Q02928 519 aa13.26□□□□□ -0.29
VPS52-213ENST00000461743 MKRN4PQ13434 485 aaPredicted RBP13.26□□□□□ -0.29
VPS52-213ENST00000461743 IKBKEQ14164 716 aa13.26□□□□□ -0.29
VPS52-213ENST00000461743 KCTD17Q8N5Z5 321 aa13.26□□□□□ -0.29
VPS52-213ENST00000461743 METTL13Q8N6R0 699 aa13.26□□□□□ -0.29
VPS52-213ENST00000461743 SLC7A3Q8WY07 619 aa13.26□□□□□ -0.29
VPS52-213ENST00000461743 CCDC43Q96MW1 224 aaKnown RBP13.26□□□□□ -0.29
VPS52-213ENST00000461743 FTHL17Q9BXU8 183 aa13.26□□□□□ -0.29
VPS52-213ENST00000461743 CELF4Q9BZC1 486 aaKnown RBP13.26□□□□□ -0.29
VPS52-213ENST00000461743 RGL1Q9NZL6 768 aa13.26□□□□□ -0.29
VPS52-213ENST00000461743 WRAP73Q9P2S5 460 aaPredicted RBP13.26□□□□□ -0.29
VPS52-213ENST00000461743 MTMR6Q9Y217 621 aa13.26□□□□□ -0.29
VPS52-213ENST00000461743 MORC2Q9Y6X9 1032 aaPredicted RBP13.26□□□□□ -0.29
VPS52-213ENST00000461743 COL4A4P53420 1690 aaPredicted RBP13.25□□□□□ -0.29
VPS52-213ENST00000461743 DDX11L8A8MPP1 907 aa13.25□□□□□ -0.29
VPS52-213ENST00000461743 DNM2P50570 870 aa13.25□□□□□ -0.29
VPS52-213ENST00000461743 POLGP54098 1239 aaPredicted RBP13.25□□□□□ -0.29
VPS52-213ENST00000461743 WDR5P61964 334 aaKnown RBP13.25□□□□□ -0.29
VPS52-213ENST00000461743 RESTQ13127 1097 aa13.25□□□□□ -0.29
VPS52-213ENST00000461743 CTTNQ14247 550 aaKnown RBP13.25□□□□□ -0.29
VPS52-213ENST00000461743 LPIN1Q14693 890 aa13.25□□□□□ -0.29
VPS52-213ENST00000461743 RAB30Q15771 203 aa13.25□□□□□ -0.29
VPS52-213ENST00000461743 FAM109BQ6ICB4 259 aaPredicted RBP13.25□□□□□ -0.29
VPS52-213ENST00000461743 EFCAB12Q6NXP0 572 aa13.25□□□□□ -0.29
VPS52-213ENST00000461743 DTHD1Q6ZMT9 781 aa13.25□□□□□ -0.29
VPS52-213ENST00000461743 TPH2Q8IWU9 490 aa13.25□□□□□ -0.29
VPS52-213ENST00000461743 ZBTB10Q96DT7 871 aa13.25□□□□□ -0.29
VPS52-213ENST00000461743 AK8Q96MA6 479 aa13.25□□□□□ -0.29
VPS52-213ENST00000461743 DHX33Q9H6R0 707 aaKnown RBP13.25□□□□□ -0.29
VPS52-213ENST00000461743 CXXC1Q9P0U4 656 aaPredicted RBP13.25□□□□□ -0.29
VPS52-213ENST00000461743 DBR1Q9UK59 544 aaKnown RBP13.25□□□□□ -0.29
VPS52-213ENST00000461743 AKT3Q9Y243 479 aa13.25□□□□□ -0.29
VPS52-213ENST00000461743 CHD7Q9P2D1 2997 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 CDH23Q9H251 3354 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 SOX1O00570 391 aaPredicted RBP13.24□□□□□ -0.29
VPS52-213ENST00000461743 DGAT1O75907 488 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 GHRP10912 638 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 ATP2A2P16615 1042 aaKnown RBP13.24□□□□□ -0.29
VPS52-213ENST00000461743 CLCN3P51790 818 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 CRYBB1P53674 252 aaPredicted RBP13.24□□□□□ -0.29
VPS52-213ENST00000461743 PAK2Q13177 524 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 BECN1Q14457 450 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 PLA2G4FQ68DD2 849 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 TRMT1LQ7Z2T5 733 aaKnown RBP13.24□□□□□ -0.29
VPS52-213ENST00000461743 ZNF410Q86VK4 478 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 DBF4BQ8NFT6 615 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 TCP11Q8WWU5 503 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 CEP170P1Q96L14 293 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 NACC1Q96RE7 527 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 LRWD1Q9UFC0 647 aa13.24□□□□□ -0.29
VPS52-213ENST00000461743 TMEM150BA6NC51 233 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 GPR32O75388 356 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 AMHP03971 560 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 SPATA31C1P0DKV0 1188 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 RARRES1P49788 294 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 GPC3P51654 580 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 EMC2Q15006 297 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 XKR9Q5GH70 373 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 KRT79Q5XKE5 535 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 FERMT3Q86UX7 667 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 CATSPER3Q86XQ3 398 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 LRRC71Q8N4P6 559 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 SNX29Q8TEQ0 813 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 MTRQ99707 1265 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 ATP6V0A4Q9HBG4 840 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 FOXD4L1Q9NU39 408 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 RNF216Q9NWF9 866 aaPredicted RBP13.23□□□□□ -0.29
VPS52-213ENST00000461743 MSRAQ9UJ68 235 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 PCDHA11Q9Y5I1 949 aa13.23□□□□□ -0.29
VPS52-213ENST00000461743 GPR182O15218 404 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 MED24O75448 989 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 RPS6KA5O75582 802 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 VTNP04004 478 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 DNAJB2P25686 324 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 CCT6AP40227 531 aaKnown RBP13.22□□□□□ -0.29
VPS52-213ENST00000461743 TMEM62Q0P6H9 643 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 HYIQ5T013 277 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 ZNF697Q5TEC3 545 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 POTEGQ6S5H5 508 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 MCPH1Q8NEM0 835 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 PSPC1Q8WXF1 523 aaKnown RBP13.22□□□□□ -0.29
VPS52-213ENST00000461743 LRCH3Q96II8 777 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 OSMRQ99650 979 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 INO80BQ9C086 356 aaPredicted RBP13.22□□□□□ -0.29
VPS52-213ENST00000461743 NT5C3AQ9H0P0 336 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 ADAMTS10Q9H324 1103 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 SUGCTQ9HAC7 445 aa13.22□□□□□ -0.29
VPS52-213ENST00000461743 ASAP2O43150 1006 aa13.21□□□□□ -0.29
VPS52-213ENST00000461743 GJB5O95377 273 aa13.21□□□□□ -0.29
VPS52-213ENST00000461743 CD52P31358 61 aa13.21□□□□□ -0.29
VPS52-213ENST00000461743 LONP1P36776 959 aaKnown RBP13.21□□□□□ -0.29
VPS52-213ENST00000461743 NPEPPSP55786 919 aa13.21□□□□□ -0.29
VPS52-213ENST00000461743 NLRP11P59045 1033 aaKnown RBP13.21□□□□□ -0.29
VPS52-213ENST00000461743 MXD4Q14582 209 aaPredicted RBP13.21□□□□□ -0.29
VPS52-213ENST00000461743 PCBP1Q15365 356 aaKnown RBP eCLIP13.21□□□□□ -0.29
VPS52-213ENST00000461743 SF3A1Q15459 793 aaKnown RBP13.21□□□□□ -0.29
VPS52-213ENST00000461743 KIZQ2M2Z5 673 aa13.21□□□□□ -0.29
VPS52-213ENST00000461743 TCTN1Q2MV58 587 aa13.21□□□□□ -0.29
VPS52-213ENST00000461743 HERC6Q8IVU3 1022 aa13.21□□□□□ -0.29
VPS52-213ENST00000461743 SCLT1Q96NL6 688 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms