RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 PADI6Q6TGC4 694 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 PLPPR4Q7Z2D5 763 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 SMYD4Q8IYR2 804 aaPredicted RBP12.22□□□□□ -0.45
SCN9A-205ENST00000454569 DAW1Q8N136 415 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 GLIS3Q8NEA6 775 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 REEP2Q9BRK0 252 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 SEPT9Q9UHD8 586 aaPredicted RBP12.22□□□□□ -0.45
SCN9A-205ENST00000454569 DBR1Q9UK59 544 aaKnown RBP12.22□□□□□ -0.45
SCN9A-205ENST00000454569 USO1O60763 962 aaKnown RBP12.22□□□□□ -0.45
SCN9A-205ENST00000454569 C6orf222P0C671 652 aaPredicted RBP12.22□□□□□ -0.45
SCN9A-205ENST00000454569 XRCC6P12956 609 aaKnown RBP eCLIP12.22□□□□□ -0.45
SCN9A-205ENST00000454569 PRMT2P55345 433 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 ASIC1P78348 528 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 TYRO3Q06418 890 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 MORC3Q14149 939 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 XKR3Q5GH77 459 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 FAM160B1Q5W0V3 765 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 LHX8Q68G74 356 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 LRSAM1Q6UWE0 723 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 C11orf57Q6ZUT1 292 aaPredicted RBP12.22□□□□□ -0.45
SCN9A-205ENST00000454569 SLAIN1Q8ND83 568 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 SMARCE1Q969G3 411 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 CEP170P1Q96L14 293 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 NIFKQ9BYG3 293 aaKnown RBP12.22□□□□□ -0.45
SCN9A-205ENST00000454569 UNC93B1Q9H1C4 597 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 UPF3AQ9H1J1 476 aaKnown RBP12.22□□□□□ -0.45
SCN9A-205ENST00000454569 SMARCAD1Q9H4L7 1026 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 MAGEF1Q9HAY2 307 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 GPRC5CQ9NQ84 441 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 XPNPEP1Q9NQW7 623 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 PDLIM7Q9NR12 457 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 CYP26B1Q9NR63 512 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 ANKEF1Q9NU02 776 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 GDAQ9Y2T3 454 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 Q9Y3F1 56 aa12.22□□□□□ -0.45
SCN9A-205ENST00000454569 ARHGEF35A5YM69 484 aa12.21□□□□□ -0.46
SCN9A-205ENST00000454569 H3BRB1 525 aa12.21□□□□□ -0.46
SCN9A-205ENST00000454569 MYL3P08590 195 aa12.21□□□□□ -0.46
SCN9A-205ENST00000454569 EHHADHQ08426 723 aa12.21□□□□□ -0.46
SCN9A-205ENST00000454569 ARHGEF6Q15052 776 aa12.21□□□□□ -0.46
SCN9A-205ENST00000454569 FSCN1Q16658 493 aaKnown RBP12.21□□□□□ -0.46
SCN9A-205ENST00000454569 DPCR1Q3MIW9 517 aa12.21□□□□□ -0.46
SCN9A-205ENST00000454569 CCSAPQ6IQ19 270 aaPredicted RBP12.21□□□□□ -0.46
SCN9A-205ENST00000454569 CNNM4Q6P4Q7 775 aa12.21□□□□□ -0.46
SCN9A-205ENST00000454569 GPIHBP1Q8IV16 184 aa12.21□□□□□ -0.46
SCN9A-205ENST00000454569 AP5M1Q9H0R1 490 aa12.21□□□□□ -0.46
SCN9A-205ENST00000454569 TUT1Q9H6E5 874 aaKnown RBP12.21□□□□□ -0.46
SCN9A-205ENST00000454569 AZI2Q9H6S1 392 aa12.21□□□□□ -0.46
SCN9A-205ENST00000454569 TBC1D7Q9P0N9 293 aa12.21□□□□□ -0.46
SCN9A-205ENST00000454569 DDX20Q9UHI6 824 aaKnown RBP12.21□□□□□ -0.46
SCN9A-205ENST00000454569 IDEP14735 1019 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 CHMP4BP1P59074 171 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 STK4Q13043 487 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 DRP2Q13474 957 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 DGKDQ16760 1214 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 GNASQ5JWF2 1037 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 KCTD17Q8N5Z5 321 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 KLHDC9Q8NEP7 349 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 ATP8B4Q8TF62 1192 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 BSNDQ8WZ55 320 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 MED15Q96RN5 788 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 DNAJC25Q9H1X3 360 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 XPNPEP3Q9NQH7 507 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 PCDHA2Q9Y5H9 948 aa12.2□□□□□ -0.46
SCN9A-205ENST00000454569 FRMD3A2A2Y4 597 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 HAS3O00219 553 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 HIP1RO75146 1068 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 LETM1O95202 739 aaPredicted RBP12.19□□□□□ -0.46
SCN9A-205ENST00000454569 RARBP10826 455 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 INSRRP14616 1297 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 NLRP12P59046 1061 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 NKX3-2P78367 333 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 PURAQ00577 322 aaKnown RBP12.19□□□□□ -0.46
SCN9A-205ENST00000454569 AMPD3Q01432 767 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 COASYQ13057 564 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 LRRC41Q15345 812 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 SASS6Q6UVJ0 657 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 CXCL17Q6UXB2 119 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 UNC13DQ70J99 1090 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 OTUD6AQ7L8S5 288 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 KIAA0895Q8NCT3 520 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 GSDMAQ96QA5 445 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 FIZ1Q96SL8 496 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 HMX1Q9NP08 348 aaPredicted RBP12.19□□□□□ -0.46
SCN9A-205ENST00000454569 SLC39A2Q9NP94 309 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 PANK4Q9NVE7 773 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 ERAP1Q9NZ08 941 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 MAPK8IP1Q9UQF2 711 aa12.19□□□□□ -0.46
SCN9A-205ENST00000454569 KIAA0100Q14667 2235 aaKnown RBP12.19□□□□□ -0.46
SCN9A-205ENST00000454569 PPP1R3GB7ZBB8 358 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 DKC1O60832 514 aaKnown RBP eCLIP12.18□□□□□ -0.46
SCN9A-205ENST00000454569 RHOBTB3O94955 611 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 SMC2O95347 1197 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 F2P00734 622 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 KRT18P05783 430 aaKnown RBP12.18□□□□□ -0.46
SCN9A-205ENST00000454569 GUCY2CP25092 1073 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 CASP5P51878 434 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 IGBP1P78318 339 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 ZNF200P98182 395 aaPredicted RBP12.18□□□□□ -0.46
SCN9A-205ENST00000454569 KCNA10Q16322 511 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms