RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 LRRC71Q8N4P6 559 aa23.41■■□□□ 1.34
SDC1-205ENST00000447124 ADAMTS10Q9H324 1103 aa23.41■■□□□ 1.34
SDC1-205ENST00000447124 ORC3Q9UBD5 711 aaPredicted RBP23.41■■□□□ 1.34
SDC1-205ENST00000447124 WDR81Q562E7 1941 aa23.41■■□□□ 1.34
SDC1-205ENST00000447124 GRM6O15303 877 aa23.4■■□□□ 1.34
SDC1-205ENST00000447124 ANKRD1Q15327 319 aa23.4■■□□□ 1.34
SDC1-205ENST00000447124 PTPROQ16827 1216 aa23.4■■□□□ 1.34
SDC1-205ENST00000447124 LETM2Q2VYF4 491 aa23.4■■□□□ 1.34
SDC1-205ENST00000447124 EARS2Q5JPH6 523 aaKnown RBP23.4■■□□□ 1.34
SDC1-205ENST00000447124 FAM228AQ86W67 206 aa23.4■■□□□ 1.34
SDC1-205ENST00000447124 IL27Q8NEV9 243 aa23.4■■□□□ 1.34
SDC1-205ENST00000447124 CEP89Q96ST8 783 aa23.4■■□□□ 1.34
SDC1-205ENST00000447124 DDX25Q9UHL0 483 aaKnown RBP23.4■■□□□ 1.34
SDC1-205ENST00000447124 MRPL42Q9Y6G3 142 aaKnown RBP23.4■■□□□ 1.34
SDC1-205ENST00000447124 MUC3AQ02505 3323 aa23.4■■□□□ 1.34
SDC1-205ENST00000447124 EML1O00423 815 aa23.39■■□□□ 1.33
SDC1-205ENST00000447124 RDM1Q8NG50 284 aa23.39■■□□□ 1.33
SDC1-205ENST00000447124 ZNF668Q96K58 619 aaPredicted RBP23.39■■□□□ 1.33
SDC1-205ENST00000447124 ADAM2Q99965 735 aa23.39■■□□□ 1.33
SDC1-205ENST00000447124 NIFKQ9BYG3 293 aaKnown RBP23.39■■□□□ 1.33
SDC1-205ENST00000447124 RGS18Q9NS28 235 aa23.39■■□□□ 1.33
SDC1-205ENST00000447124 CCDC194A0A1B0GVG4 234 aa23.38■■□□□ 1.33
SDC1-205ENST00000447124 TMEM150BA6NC51 233 aa23.38■■□□□ 1.33
SDC1-205ENST00000447124 C9IYK1 514 aa23.38■■□□□ 1.33
SDC1-205ENST00000447124 GPR182O15218 404 aa23.38■■□□□ 1.33
SDC1-205ENST00000447124 STAG3L1P0CL83 205 aa23.38■■□□□ 1.33
SDC1-205ENST00000447124 SARSP49591 514 aaKnown RBP23.38■■□□□ 1.33
SDC1-205ENST00000447124 NLRP11P59045 1033 aaKnown RBP23.38■■□□□ 1.33
SDC1-205ENST00000447124 FAM189BP81408 668 aa23.38■■□□□ 1.33
SDC1-205ENST00000447124 DSC3Q14574 896 aa23.38■■□□□ 1.33
SDC1-205ENST00000447124 TCEAL5Q5H9L2 206 aa23.38■■□□□ 1.33
SDC1-205ENST00000447124 CMTR2Q8IYT2 770 aaKnown RBP23.38■■□□□ 1.33
SDC1-205ENST00000447124 BANK1Q8NDB2 785 aa23.38■■□□□ 1.33
SDC1-205ENST00000447124 UBE2ZQ9H832 354 aaPredicted RBP23.38■■□□□ 1.33
SDC1-205ENST00000447124 BDP1A6H8Y1 2624 aa23.37■■□□□ 1.33
SDC1-205ENST00000447124 FAM205CA6NFA0 338 aa23.37■■□□□ 1.33
SDC1-205ENST00000447124 IBSPP21815 317 aaPredicted RBP23.37■■□□□ 1.33
SDC1-205ENST00000447124 NEK4P51957 841 aa23.37■■□□□ 1.33
SDC1-205ENST00000447124 DRP2Q13474 957 aa23.37■■□□□ 1.33
SDC1-205ENST00000447124 PAN2Q504Q3 1202 aaKnown RBP23.37■■□□□ 1.33
SDC1-205ENST00000447124 PIK3AP1Q6ZUJ8 805 aa23.37■■□□□ 1.33
SDC1-205ENST00000447124 NEK8Q86SG6 692 aa23.37■■□□□ 1.33
SDC1-205ENST00000447124 GTF3C6Q969F1 213 aa23.37■■□□□ 1.33
SDC1-205ENST00000447124 SH2D3AQ9BRG2 576 aa23.37■■□□□ 1.33
SDC1-205ENST00000447124 KCNMB3Q9NPA1 279 aa23.37■■□□□ 1.33
SDC1-205ENST00000447124 AKT3Q9Y243 479 aa23.37■■□□□ 1.33
SDC1-205ENST00000447124 RWDD3Q9Y3V2 267 aa23.37■■□□□ 1.33
SDC1-205ENST00000447124 NLRC5Q86WI3 1866 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 XBP1P17861 261 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 TMOD1P28289 359 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 CAMK1Q14012 370 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 XKR3Q5GH77 459 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 FAM102BQ5T8I3 360 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 PPP4R3AQ6IN85 833 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 FAM43BQ6ZT52 329 aaPredicted RBP23.36■■□□□ 1.33
SDC1-205ENST00000447124 SLC24A5Q71RS6 500 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 HAS1Q92839 578 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 VAV3Q9UKW4 847 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 LRFN2Q9ULH4 789 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 PLAGL2Q9UPG8 496 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 PCDHB7Q9Y5E2 793 aa23.36■■□□□ 1.33
SDC1-205ENST00000447124 ST3GAL1Q11201 340 aa23.35■■□□□ 1.33
SDC1-205ENST00000447124 NR5A1Q13285 461 aa23.35■■□□□ 1.33
SDC1-205ENST00000447124 MTERF2Q49AM1 385 aa23.35■■□□□ 1.33
SDC1-205ENST00000447124 ODR4Q5SWX8 454 aa23.35■■□□□ 1.33
SDC1-205ENST00000447124 NSUN7Q8NE18 718 aaKnown RBP23.35■■□□□ 1.33
SDC1-205ENST00000447124 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.35■■□□□ 1.33
SDC1-205ENST00000447124 TNFRSF25Q93038 417 aa23.35■■□□□ 1.33
SDC1-205ENST00000447124 FAM20AQ96MK3 541 aa23.35■■□□□ 1.33
SDC1-205ENST00000447124 MAP7D2Q96T17 732 aa23.35■■□□□ 1.33
SDC1-205ENST00000447124 C11orf84Q9BUA3 381 aaPredicted RBP23.35■■□□□ 1.33
SDC1-205ENST00000447124 PLVAPQ9BX97 442 aa23.35■■□□□ 1.33
SDC1-205ENST00000447124 ALG13Q9NP73 1137 aaKnown RBP23.35■■□□□ 1.33
SDC1-205ENST00000447124 C1orf112Q9NSG2 853 aa23.35■■□□□ 1.33
SDC1-205ENST00000447124 IGKV6-21A0A0C4DH24 114 aa23.34■■□□□ 1.33
SDC1-205ENST00000447124 DENND3A2RUS2 1198 aa23.34■■□□□ 1.33
SDC1-205ENST00000447124 DDX11L8A8MPP1 907 aa23.34■■□□□ 1.33
SDC1-205ENST00000447124 JAK2O60674 1132 aa23.34■■□□□ 1.33
SDC1-205ENST00000447124 KCNA5P22460 613 aa23.34■■□□□ 1.33
SDC1-205ENST00000447124 EIF4BP23588 611 aaKnown RBP23.34■■□□□ 1.33
SDC1-205ENST00000447124 DNAJB1P25685 340 aa23.34■■□□□ 1.33
SDC1-205ENST00000447124 GPC3P51654 580 aa23.34■■□□□ 1.33
SDC1-205ENST00000447124 TBC1D8BQ0IIM8 1120 aa23.34■■□□□ 1.33
SDC1-205ENST00000447124 LEXMQ3ZCV2 418 aa23.34■■□□□ 1.33
SDC1-205ENST00000447124 TIGD5Q53EQ6 642 aa23.34■■□□□ 1.33
SDC1-205ENST00000447124 SPPL3Q8TCT6 385 aa23.34■■□□□ 1.33
SDC1-205ENST00000447124 WASF1Q92558 559 aa23.34■■□□□ 1.33
SDC1-205ENST00000447124 NSUN3Q9H649 340 aaKnown RBP23.34■■□□□ 1.33
SDC1-205ENST00000447124 SEPT9Q9UHD8 586 aaPredicted RBP23.34■■□□□ 1.33
SDC1-205ENST00000447124 RALGAPA2Q2PPJ7 1873 aa23.33■■□□□ 1.33
SDC1-205ENST00000447124 CCNT1O60563 726 aaKnown RBP23.33■■□□□ 1.33
SDC1-205ENST00000447124 ITGB1P05556 798 aa23.33■■□□□ 1.33
SDC1-205ENST00000447124 PPP2R5CQ13362 524 aa23.33■■□□□ 1.33
SDC1-205ENST00000447124 COL19A1Q14993 1142 aa23.33■■□□□ 1.33
SDC1-205ENST00000447124 ANO5Q75V66 913 aa23.33■■□□□ 1.33
SDC1-205ENST00000447124 LMAN2LQ9H0V9 348 aa23.33■■□□□ 1.33
SDC1-205ENST00000447124 CSDE1O75534 798 aaKnown RBP23.32■■□□□ 1.32
SDC1-205ENST00000447124 DARSP14868 501 aaKnown RBP23.32■■□□□ 1.32
SDC1-205ENST00000447124 GCFC2P16383 781 aaKnown RBP23.32■■□□□ 1.32
SDC1-205ENST00000447124 FGFR4P22455 802 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms