RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 KDM3AQ9Y4C1 1321 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 EVPLQ92817 2033 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 TMEM265A0A087WTH1 108 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 TMEM150BA6NC51 233 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 GRXCR1A8MXD5 290 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 STBD1O95210 358 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 AMHP03971 560 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 DNAJB2P25686 324 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 YWHABP31946 246 aaKnown RBP12.81□□□□□ -0.36
COL28A1-203ENST00000435823 DNM2P50570 870 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 CLCN3P51790 818 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 PTGDRQ13258 359 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 LPIN1Q14693 890 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 ODR4Q5SWX8 454 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 HAUS3Q68CZ6 603 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 PLA2G4FQ68DD2 849 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 ANO5Q75V66 913 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 BRAPQ7Z569 592 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 LRRC71Q8N4P6 559 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 SLC7A3Q8WY07 619 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 TIFAQ96CG3 184 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 CEP170P1Q96L14 293 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 CCDC43Q96MW1 224 aaKnown RBP12.81□□□□□ -0.36
COL28A1-203ENST00000435823 HSD17B14Q9BPX1 270 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 PBX4Q9BYU1 374 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 CYP26B1Q9NR63 512 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 STK24Q9Y6E0 443 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 SIP14410 1827 aa12.81□□□□□ -0.36
COL28A1-203ENST00000435823 SLITRK3O94933 977 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 LYPLA2O95372 231 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 VTNP04004 478 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 SYT1P21579 422 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 RFC5P40937 340 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 POLGP54098 1239 aaPredicted RBP12.8□□□□□ -0.36
COL28A1-203ENST00000435823 PAK2Q13177 524 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 TCTN1Q2MV58 587 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 XKR9Q5GH70 373 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 HERC6Q8IVU3 1022 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 DEFB123Q8N688 67 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 LINC01465Q8N7H1 131 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 C4orf32Q8N8J7 132 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 SCLT1Q96NL6 688 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 PPP1R16BQ96T49 567 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 SH2D3AQ9BRG2 576 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 TUFT1Q9NNX1 390 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.8□□□□□ -0.36
COL28A1-203ENST00000435823 WRAP73Q9P2S5 460 aaPredicted RBP12.8□□□□□ -0.36
COL28A1-203ENST00000435823 PCDHA11Q9Y5I1 949 aa12.8□□□□□ -0.36
COL28A1-203ENST00000435823 MAFO75444 373 aaPredicted RBP12.79□□□□□ -0.36
COL28A1-203ENST00000435823 CD52P31358 61 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 PBX2P40425 430 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 PRPHP41219 470 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 RABGGTBP53611 331 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 CRYBB1P53674 252 aaPredicted RBP12.79□□□□□ -0.36
COL28A1-203ENST00000435823 NPEPPSP55786 919 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 NLRP11P59045 1033 aaKnown RBP12.79□□□□□ -0.36
COL28A1-203ENST00000435823 DEFB103AP81534 67 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 CDC42EP1Q00587 391 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 KIZQ2M2Z5 673 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 DTHD1Q6ZMT9 781 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 FAM43BQ6ZT52 329 aaPredicted RBP12.79□□□□□ -0.36
COL28A1-203ENST00000435823 MYOCDQ8IZQ8 938 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 CEP89Q96ST8 783 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 OSMRQ99650 979 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 ZBED2Q9BTP6 218 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 POLR3CQ9BUI4 534 aaPredicted RBP12.79□□□□□ -0.36
COL28A1-203ENST00000435823 FTHL17Q9BXU8 183 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 OSBPL7Q9BZF2 842 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 SLC28A3Q9HAS3 691 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 ANKEF1Q9NU02 776 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 LRWD1Q9UFC0 647 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 MICAL3Q7RTP6 2002 aa12.79□□□□□ -0.36
COL28A1-203ENST00000435823 IGKV6-21A0A0C4DH24 114 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 GPR182O15218 404 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 TLL1O43897 1013 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 GAS2O43903 313 aaKnown RBP12.78□□□□□ -0.36
COL28A1-203ENST00000435823 GPR32O75388 356 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 RPS6KA5O75582 802 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 BMP15O95972 392 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 XRCC6P12956 609 aaKnown RBP eCLIP12.78□□□□□ -0.36
COL28A1-203ENST00000435823 MUTP22033 750 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 ATP2C1P98194 919 aaPredicted RBP12.78□□□□□ -0.36
COL28A1-203ENST00000435823 NFX1Q12986 1120 aaKnown RBP12.78□□□□□ -0.36
COL28A1-203ENST00000435823 PDIA5Q14554 519 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.78□□□□□ -0.36
COL28A1-203ENST00000435823 Q7L0L9 218 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 FERMT3Q86UX7 667 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 CATSPER3Q86XQ3 398 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 NLRP7Q8WX94 980 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 MTRQ99707 1265 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 NKX2-4Q9H2Z4 354 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 AGO3Q9H9G7 860 aaKnown RBP12.78□□□□□ -0.36
COL28A1-203ENST00000435823 CDHR5Q9HBB8 845 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 SUCLA2Q9P2R7 463 aaPredicted RBP12.78□□□□□ -0.36
COL28A1-203ENST00000435823 PADI3Q9ULW8 664 aa12.78□□□□□ -0.36
COL28A1-203ENST00000435823 GBF1Q92538 1859 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 STX6O43752 255 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 MED24O75448 989 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 GJB5O95377 273 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 SPATA31C1P0DKV0 1188 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms