RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 ANAPC7Q9UJX3 599 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 DNAJC12Q9UKB3 198 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 IKBKBO14920 756 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 ECE2O60344 883 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 ASNSP08243 561 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 CA4P22748 312 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 GIPC2Q8TF65 315 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 KLHL29Q96CT2 875 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 CEP19Q96LK0 163 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 SCINQ9Y6U3 715 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 MOCS2O96007 188 aaPredicted RBP16.49■□□□□ 0.23
PTPRF-206ENST00000429895 KITP10721 976 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 ALCAMQ13740 583 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 BZW1Q7L1Q6 419 aaKnown RBP16.49■□□□□ 0.23
PTPRF-206ENST00000429895 CYTH2Q99418 400 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 GTSE1Q9NYZ3 720 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 ADAM22Q9P0K1 906 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 POTEMA6NI47 508 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 ZBTB7AO95365 584 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 SSTR3P32745 418 aaPredicted RBP16.49■□□□□ 0.23
PTPRF-206ENST00000429895 PHKA2P46019 1235 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 PAPOLAP51003 745 aaKnown RBP16.49■□□□□ 0.23
PTPRF-206ENST00000429895 ZBED6P86452 979 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 NME3Q13232 169 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 MAPK6Q16659 721 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 ARHGEF25Q86VW2 580 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 DCAF4Q8WV16 495 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 TJP3O95049 919 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 FGGP02679 453 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 MYL1P05976 194 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 IMPG1Q17R60 797 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 TMEM270Q6UE05 265 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 FMO2Q99518 471 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 ADAMTS1Q9UHI8 967 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 PACSIN2Q9UNF0 486 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-206ENST00000429895 PALLDQ8WX93 1383 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 GCLMP48507 274 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 PRELPP51888 382 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 ESRRGP62508 458 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 MB21D1Q8N884 522 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 NEK9Q8TD19 979 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 NDUFA10O95299 355 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 ESRRAP11474 423 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-206ENST00000429895 ADORA2BP29275 332 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 SLFNL1Q499Z3 407 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 DYDC2Q96IM9 177 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 CCDC195A0A1B0GUA6 201 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 SLC10A5Q5PT55 438 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 ZNF302Q9NR11 478 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 TOPORSQ9NS56 1045 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-206ENST00000429895 HOXC10Q9NYD6 342 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 MID2Q9UJV3 735 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 ERVV-1B6SEH8 477 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 M0QYV0 167 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 IFNAR1P17181 557 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 TNFAIP2Q03169 654 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 PTPN12Q05209 780 aaKnown RBP16.48■□□□□ 0.23
PTPRF-206ENST00000429895 LBRQ14739 615 aaKnown RBP16.48■□□□□ 0.23
PTPRF-206ENST00000429895 LRRC31Q6UY01 552 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 SFR1Q86XK3 245 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 SRRM1Q8IYB3 904 aaKnown RBP16.48■□□□□ 0.23
PTPRF-206ENST00000429895 RBM46Q8TBY0 533 aaKnown RBP16.48■□□□□ 0.23
PTPRF-206ENST00000429895 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.48■□□□□ 0.23
PTPRF-206ENST00000429895 THEGQ9P2T0 379 aa16.48■□□□□ 0.23
PTPRF-206ENST00000429895 ARAP3Q8WWN8 1544 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 USP17L15C9J2P7 530 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 USP17L13C9JLJ4 530 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 USP17L11C9JVI0 530 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 USP17L18D6R9N7 530 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 USP17L22D6RA61 530 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 USP17L17D6RBQ6 530 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 USP17L19D6RCP7 530 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 USP17L20D6RJB6 530 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 LARGE1O95461 756 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 USP17L24Q0WX57 530 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 USP17L6PQ6QN14 398 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 SUN2Q9UH99 717 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 ATICP31939 592 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 HSP90AA5PQ58FG0 334 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 FBXO41Q8TF61 875 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 MMP19Q99542 508 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 SLC7A5P2Q9GIP4 190 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 CNOT8Q9UFF9 292 aaKnown RBP16.47■□□□□ 0.23
PTPRF-206ENST00000429895 HEG1Q9ULI3 1381 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 CACNB2Q08289 660 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-206ENST00000429895 ALKBH5Q6P6C2 394 aaKnown RBP16.47■□□□□ 0.23
PTPRF-206ENST00000429895 BEST2Q8NFU1 509 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 HLFQ16534 295 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 OTUD5Q96G74 571 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 NR1H4Q96RI1 486 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-206ENST00000429895 MAP3K7O43318 606 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 PADI6Q6TGC4 694 aa16.47■□□□□ 0.23
PTPRF-206ENST00000429895 POLR3CQ9BUI4 534 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-206ENST00000429895 UBE4BO95155 1302 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 ZFYVE16Q7Z3T8 1539 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 A0A0G2JND7 137 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 NMT2O60551 498 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 EEF1DP29692 281 aaKnown RBP16.46■□□□□ 0.23
PTPRF-206ENST00000429895 NNMTP40261 264 aa16.46■□□□□ 0.23
PTPRF-206ENST00000429895 TMPRSS15P98073 1019 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms