RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ERMNQ8TAM6 284 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ETNPPLQ8TBG4 499 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 CCHCR1Q8TD31 782 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ATP8B4Q8TF62 1192 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 IFT81Q8WYA0 676 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ZKSCAN4Q969J2 545 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 MKL1Q969V6 931 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SEC16BQ96JE7 1060 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 OSBPL7Q9BZF2 842 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 TANGO6Q9C0B7 1094 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 STMN4Q9H169 189 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 PABPC3Q9H361 631 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 TMEM260Q9NX78 707 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SMARCAL1Q9NZC9 954 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 KCND2Q9NZV8 630 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SEL1LQ9UBV2 794 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 UTP11Q9Y3A2 253 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SAMM50Q9Y512 469 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ANKRD31Q8N7Z5 1873 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 POTEFA5A3E0 1075 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 USP17L5A8MUK1 530 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 E7EVH7 732 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 PODXLO00592 558 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 DDX3YO15523 660 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 PPIP5K2O43314 1243 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 AGTP01019 485 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 CYP3A4P08684 503 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 POTEIP0CG38 1075 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 POTEJP0CG39 1038 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 XRCC5P13010 732 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ALAS1P13196 640 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 NR2F2P24468 414 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 BTDP43251 543 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ATP1A2P50993 1020 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 MNAT1P51948 309 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 CRY2Q49AN0 593 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 DCAF8Q5TAQ9 597 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 POTEEQ6S8J3 1075 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 PEX26Q7Z412 305 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SLC9A9Q8IVB4 645 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 RAPGEF5Q92565 580 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SLC35C1Q96A29 364 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 STK33Q9BYT3 514 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ROPN1BQ9BZX4 212 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ROPN1Q9HAT0 212 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SLC40A1Q9NP59 571 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 TFCP2L1Q9NZI6 479 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 AMFRQ9UKV5 643 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SLC12A4Q9UP95 1085 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SPATA31A6Q5VVP1 1343 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SYNGAP1Q96PV0 1343 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 WDR81Q562E7 1941 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 CCDC169A6NNP5 214 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 H0YHG0 523 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 KRIT1O00522 736 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 FOSP01100 380 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 GOLGA8HP0CJ92 632 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 HOXD13P35453 343 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 STAT1P42224 750 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ADCY2Q08462 1091 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 PLS1Q14651 629 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 KIF22Q14807 665 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SNCBQ16143 134 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 KCTD16Q68DU8 428 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SMYD5Q6GMV2 418 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 GPBP1Q86WP2 473 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 RHOT2Q8IXI1 618 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ANKRD13CQ8N6S4 541 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 C12orf50Q8NA57 414 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 SLC44A5Q8NCS7 719 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 GLIS3Q8NEA6 775 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 CFAP61Q8NHU2 1237 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 RBM46Q8TBY0 533 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 DCAF4Q8WV16 495 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 CHMP6Q96FZ7 201 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 CCDC17Q96LX7 622 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ANKRD27Q96NW4 1050 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 XPO6Q96QU8 1125 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 RPS6KC1Q96S38 1066 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ERP44Q9BS26 406 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 PACSIN1Q9BY11 444 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 EPB41L4BQ9H329 900 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ATP6V0A4Q9HBG4 840 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 DONSONQ9NYP3 566 aa6.24□□□□□ -1.41
CCDC88A-203ENST00000412148 ASTN1O14525 1302 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 ADAMTSL1Q8N6G6 1762 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 A0A1B0GUA9 196 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 ESYT3A0FGR9 886 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 ANKRD65E5RJM6 399 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 DDX3XO00571 662 aaKnown RBP eCLIP6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 MAPK13O15264 365 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 P4HA2O15460 535 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 CEP104O60308 925 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 PPP1R11O60927 126 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 ALADP13716 330 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 CTNNA2P26232 953 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 CHRNA3P32297 505 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 SOX5P35711 763 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 EPS15P42566 896 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 GUCY2FP51841 1108 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms