RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 FBXO16Q8IX29 292 aaPredicted RBP7.9□□□□□ -1.15
SCN9A-202ENST00000409435 DCP1BQ8IZD4 617 aaKnown RBP7.9□□□□□ -1.15
SCN9A-202ENST00000409435 CMTR1Q8N1G2 835 aaKnown RBP7.9□□□□□ -1.15
SCN9A-202ENST00000409435 ZNF512Q96ME7 567 aaPredicted RBP7.9□□□□□ -1.15
SCN9A-202ENST00000409435 ACCSQ96QU6 501 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 SEPT5Q99719 369 aaPredicted RBP7.9□□□□□ -1.15
SCN9A-202ENST00000409435 MSTO1Q9BUK6 570 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 NRKQ7Z2Y5 1582 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 SMIM23A6NLE4 172 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 E7EVH7 732 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 STAM2O75886 525 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 NR3C2P08235 984 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 VIMP08670 466 aaKnown RBP7.9□□□□□ -1.15
SCN9A-202ENST00000409435 IFNAR2P48551 515 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 CFAP157Q5JU67 520 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 HAUS1Q96CS2 278 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 NKIRAS1Q9NYS0 192 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 FAM169AQ9Y6X4 670 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 RPTORQ8N122 1335 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 N4BP3O15049 544 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 NDUFS2O75306 463 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 ALDH2P05091 517 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 RPS6KB1P23443 525 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 VAV2P52735 878 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 CRHR2Q13324 411 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.89□□□□□ -1.15
SCN9A-202ENST00000409435 FAM149B1Q96BN6 582 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 ABHD8Q96I13 439 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 PGBD1Q96JS3 809 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 RIPOR3Q96MK2 946 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 CLSTN2Q9H4D0 955 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 KANSL3Q9P2N6 904 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 NCDNQ9UBB6 729 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 PRG3Q9Y2Y8 225 aaPredicted RBP7.89□□□□□ -1.15
SCN9A-202ENST00000409435 IPO5O00410 1097 aaKnown RBP7.89□□□□□ -1.15
SCN9A-202ENST00000409435 ZRANB2O95218 330 aaKnown RBP eCLIP7.89□□□□□ -1.15
SCN9A-202ENST00000409435 NDUFB10O96000 172 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 VCAM1P19320 739 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 ZNF131P52739 623 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 PHEXP78562 749 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 RAD51Q06609 339 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 ZSCAN26Q16670 478 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 RGL4Q8IZJ4 473 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 NEK11Q8NG66 645 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 NSUN4Q96CB9 384 aaKnown RBP7.89□□□□□ -1.15
SCN9A-202ENST00000409435 CABS1Q96KC9 395 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 DDX20Q9UHI6 824 aaKnown RBP7.89□□□□□ -1.15
SCN9A-202ENST00000409435 NWD1Q149M9 1564 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 ADAMTSL3P82987 1691 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 QRICH2Q9H0J4 1663 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 ZBTB7BO15156 539 aaPredicted RBP7.89□□□□□ -1.15
SCN9A-202ENST00000409435 SP100P23497 879 aaPredicted RBP7.89□□□□□ -1.15
SCN9A-202ENST00000409435 RASSF2P50749 326 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 CREMQ03060 361 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 FAM110CQ1W6H9 321 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 DACT2Q5SW24 774 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 CCDC62Q6P9F0 684 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 FBXO33Q7Z6M2 555 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 CCDC63Q8NA47 563 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 ZNF668Q96K58 619 aaPredicted RBP7.89□□□□□ -1.15
SCN9A-202ENST00000409435 ZNF560Q96MR9 790 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 ANTXR1Q9H6X2 564 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 TFIP11Q9UBB9 837 aaKnown RBP7.89□□□□□ -1.15
SCN9A-202ENST00000409435 HPCAL4Q9UM19 191 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 IGKV5-2P06315 115 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 MYBP10242 640 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 SESN3P58005 492 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 TRIM68Q6AZZ1 485 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 CHRDL2Q6WN34 429 aa7.89□□□□□ -1.15
SCN9A-202ENST00000409435 COL14A1Q05707 1796 aaKnown RBP7.89□□□□□ -1.15
SCN9A-202ENST00000409435 BTBD19C9JJ37 291 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 MAN1A2O60476 641 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 RNASEH1O60930 286 aaKnown RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 PGK1P00558 417 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 BCRP11274 1271 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 LONP1P36776 959 aaKnown RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 EPHB3P54753 998 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 SNCBQ16143 134 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 MGAT5BQ3V5L5 792 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 TMEM47Q9BQJ4 181 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 TINF2Q9BSI4 451 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 SEZ6LQ9BYH1 1024 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 KCNJ14Q9UNX9 436 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 PER1O15534 1290 aaPredicted RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 SYNCRIPO60506 623 aaKnown RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 LDHAP00338 332 aaKnown RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 CHMLP26374 656 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 DSG3P32926 999 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 GRIK1P39086 918 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 EPHB1P54762 984 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 PPP1R21Q6ZMI0 780 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 OTOP2Q7RTS6 562 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 NELFCDQ8IXH7 590 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 SCFD1Q8WVM8 642 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 MRPS31Q92665 395 aaKnown RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 YY1AP1Q9H869 796 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 FAM204AQ9H8W3 233 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 CACYBPQ9HB71 228 aaKnown RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 PCDHA4Q9UN74 947 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 CAPN7Q9Y6W3 813 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms