RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 LMBR1Q8WVP7 490 aa22.76■■□□□ 1.23
VSX1-203ENST00000409285 SLC7A3Q8WY07 619 aa22.76■■□□□ 1.23
VSX1-203ENST00000409285 RUSC1Q9BVN2 902 aa22.76■■□□□ 1.23
VSX1-203ENST00000409285 GTF2IRD1Q9UHL9 959 aa22.76■■□□□ 1.23
VSX1-203ENST00000409285 MYMKA6NI61 221 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 MAGEB2O15479 319 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 GTPBP6O43824 516 aaPredicted RBP22.75■■□□□ 1.23
VSX1-203ENST00000409285 C22orf31O95567 290 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 SSBP05455 408 aaKnown RBP eCLIP22.75■■□□□ 1.23
VSX1-203ENST00000409285 GNAT1P11488 350 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 COL6A1P12109 1028 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 TBC1D8BQ0IIM8 1120 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 ITGA7Q13683 1181 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 POSTNQ15063 836 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 MARCH8Q5T0T0 291 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 SH2D3AQ9BRG2 576 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 NUP62CLQ9H1M0 184 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 ATP6V0A4Q9HBG4 840 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 STARD7Q9NQZ5 370 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 ODF2LQ9ULJ1 636 aa22.75■■□□□ 1.23
VSX1-203ENST00000409285 A0A0U1RQG5 324 aaPredicted RBP22.74■■□□□ 1.23
VSX1-203ENST00000409285 POLGP54098 1239 aaPredicted RBP22.74■■□□□ 1.23
VSX1-203ENST00000409285 EMC2Q15006 297 aa22.74■■□□□ 1.23
VSX1-203ENST00000409285 DDX12PQ92771 950 aa22.74■■□□□ 1.23
VSX1-203ENST00000409285 SYAP1Q96A49 352 aaPredicted RBP22.74■■□□□ 1.23
VSX1-203ENST00000409285 DNAJC19Q96DA6 116 aa22.74■■□□□ 1.23
VSX1-203ENST00000409285 BMP2KQ9NSY1 1161 aaPredicted RBP22.74■■□□□ 1.23
VSX1-203ENST00000409285 HDAC6Q9UBN7 1215 aa22.74■■□□□ 1.23
VSX1-203ENST00000409285 TRAK2O60296 914 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 USO1O60763 962 aaKnown RBP22.73■■□□□ 1.23
VSX1-203ENST00000409285 AFMP43652 599 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 DHX8Q14562 1220 aaKnown RBP22.73■■□□□ 1.23
VSX1-203ENST00000409285 GRAMD1CQ8IYS0 662 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 LINC01465Q8N7H1 131 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 SPATA20Q8TB22 786 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 XPNPEP1Q9NQW7 623 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 SETD4Q9NVD3 440 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 TUBE1Q9UJT0 475 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 ALPK3Q96L96 1907 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 FRMD3A2A2Y4 597 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 C17orf102A2RUQ5 167 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 ZNF131P52739 623 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 DPYDQ12882 1025 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 CCDC183Q5T5S1 534 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 C1orf53Q5VUE5 145 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 MTHFD1LQ6UB35 978 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 RBM43Q6ZSC3 357 aaKnown RBP22.73■■□□□ 1.23
VSX1-203ENST00000409285 RETREG2Q8NC44 543 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 TRAPPC12Q8WVT3 735 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 STAMQ92783 540 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 REEP2Q9BRK0 252 aa22.73■■□□□ 1.23
VSX1-203ENST00000409285 TANC1Q9C0D5 1861 aa22.72■■□□□ 1.23
VSX1-203ENST00000409285 EN2P19622 333 aaPredicted RBP22.72■■□□□ 1.23
VSX1-203ENST00000409285 RTP1P59025 263 aa22.72■■□□□ 1.23
VSX1-203ENST00000409285 MAPK7Q13164 816 aa22.72■■□□□ 1.23
VSX1-203ENST00000409285 CUL4BQ13620 913 aa22.72■■□□□ 1.23
VSX1-203ENST00000409285 GIT2Q14161 759 aa22.72■■□□□ 1.23
VSX1-203ENST00000409285 HIC1Q14526 733 aa22.72■■□□□ 1.23
VSX1-203ENST00000409285 KIFAP3Q92845 792 aa22.72■■□□□ 1.23
VSX1-203ENST00000409285 DRC1Q96MC2 740 aa22.72■■□□□ 1.23
VSX1-203ENST00000409285 TMEM63CQ9P1W3 806 aa22.72■■□□□ 1.23
VSX1-203ENST00000409285 PCDHA2Q9Y5H9 948 aa22.72■■□□□ 1.23
VSX1-203ENST00000409285 PVALEFA0A1B0GWK0 134 aa22.71■■□□□ 1.23
VSX1-203ENST00000409285 ARVCFO00192 962 aa22.71■■□□□ 1.23
VSX1-203ENST00000409285 RPLP2P05387 115 aaKnown RBP22.71■■□□□ 1.23
VSX1-203ENST00000409285 PRR29P0C7W0 189 aa22.71■■□□□ 1.23
VSX1-203ENST00000409285 KLRC1P26715 233 aa22.71■■□□□ 1.23
VSX1-203ENST00000409285 CDK7P50613 346 aa22.71■■□□□ 1.23
VSX1-203ENST00000409285 IGBP1P78318 339 aa22.71■■□□□ 1.23
VSX1-203ENST00000409285 SNX17Q15036 470 aa22.71■■□□□ 1.23
VSX1-203ENST00000409285 NT5DC1Q5TFE4 455 aa22.71■■□□□ 1.23
VSX1-203ENST00000409285 DAW1Q8N136 415 aa22.71■■□□□ 1.23
VSX1-203ENST00000409285 TCP11Q8WWU5 503 aa22.71■■□□□ 1.23
VSX1-203ENST00000409285 C17orf75Q9HAS0 396 aa22.71■■□□□ 1.23
VSX1-203ENST00000409285 MROH7Q68CQ1 1323 aa22.7■■□□□ 1.22
VSX1-203ENST00000409285 SMIM35A0A1B0GVV1 85 aa22.7■■□□□ 1.22
VSX1-203ENST00000409285 KRT18P05783 430 aaKnown RBP22.7■■□□□ 1.22
VSX1-203ENST00000409285 CHMP4BP1P59074 171 aa22.7■■□□□ 1.22
VSX1-203ENST00000409285 PNOCQ13519 176 aa22.7■■□□□ 1.22
VSX1-203ENST00000409285 GDF6Q6KF10 455 aaPredicted RBP22.7■■□□□ 1.22
VSX1-203ENST00000409285 TAF2Q6P1X5 1199 aa22.7■■□□□ 1.22
VSX1-203ENST00000409285 UNC13DQ70J99 1090 aa22.7■■□□□ 1.22
VSX1-203ENST00000409285 VTI1AQ96AJ9 217 aa22.7■■□□□ 1.22
VSX1-203ENST00000409285 HIP1RO75146 1068 aa22.69■■□□□ 1.22
VSX1-203ENST00000409285 SMC2O95347 1197 aa22.69■■□□□ 1.22
VSX1-203ENST00000409285 ASIC1P78348 528 aa22.69■■□□□ 1.22
VSX1-203ENST00000409285 EHHADHQ08426 723 aa22.69■■□□□ 1.22
VSX1-203ENST00000409285 CAMK4Q16566 473 aa22.69■■□□□ 1.22
VSX1-203ENST00000409285 FAM47CQ5HY64 1035 aa22.69■■□□□ 1.22
VSX1-203ENST00000409285 IER5Q5VY09 327 aa22.69■■□□□ 1.22
VSX1-203ENST00000409285 CAVIN1Q6NZI2 390 aaKnown RBP22.69■■□□□ 1.22
VSX1-203ENST00000409285 DYMQ7RTS9 669 aa22.69■■□□□ 1.22
VSX1-203ENST00000409285 UBE2Q1Q7Z7E8 422 aa22.69■■□□□ 1.22
VSX1-203ENST00000409285 GSDMAQ96QA5 445 aa22.69■■□□□ 1.22
VSX1-203ENST00000409285 BLZF1Q9H2G9 400 aa22.69■■□□□ 1.22
VSX1-203ENST00000409285 NPHP3-ACAD11A0A0J9YXS1 232 aa22.68■■□□□ 1.22
VSX1-203ENST00000409285 TREHO43280 583 aa22.68■■□□□ 1.22
VSX1-203ENST00000409285 KLRC4O43908 158 aa22.68■■□□□ 1.22
VSX1-203ENST00000409285 TBCAO75347 108 aaKnown RBP22.68■■□□□ 1.22
VSX1-203ENST00000409285 GAP43P17677 238 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms