RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 HOXC6P09630 235 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 MAP2K2P36507 400 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 PPP1R2P41236 205 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 IGBP1P78318 339 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 DUSP28Q4G0W2 176 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 TTI2Q6NXR4 508 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 SLC7A3Q8WY07 619 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 USP6NLQ92738 828 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 TMEM143Q96AN5 459 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 DRC1Q96MC2 740 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 NAP1L5Q96NT1 182 aaPredicted RBP4.1□□□□□ -1.75
RTN4-208ENST00000404909 TSG101Q99816 390 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 KIFC3Q9BVG8 833 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 ATP6V0A4Q9HBG4 840 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 TSKSQ9UJT2 592 aa4.1□□□□□ -1.75
RTN4-208ENST00000404909 MYH9P35579 1960 aaKnown RBP4.09□□□□□ -1.75
RTN4-208ENST00000404909 IGKV6D-21A0A0A0MT36 114 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 SLC16A4O15374 487 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 ZNF18P17022 549 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 IRX5P78411 483 aaPredicted RBP4.09□□□□□ -1.75
RTN4-208ENST00000404909 CAP1Q01518 475 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 TBC1D8BQ0IIM8 1120 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 MAPK7Q13164 816 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 DMP1Q13316 513 aaPredicted RBP4.09□□□□□ -1.75
RTN4-208ENST00000404909 EMC2Q15006 297 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 OLFML2BQ68BL8 750 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 IQSEC1Q6DN90 963 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 CENPPQ6IPU0 288 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 SARM1Q6SZW1 724 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 FILIP1Q7Z7B0 1213 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 REM2Q8IYK8 340 aaPredicted RBP4.09□□□□□ -1.75
RTN4-208ENST00000404909 SYCP3Q8IZU3 236 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 MSL3Q8N5Y2 521 aaKnown RBP4.09□□□□□ -1.75
RTN4-208ENST00000404909 ANKRD20A12PQ8NF67 263 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 PPTC7Q8NI37 304 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 CD99L2Q8TCZ2 262 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 PPP1R13LQ8WUF5 828 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 UBE2Q2Q8WVN8 375 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 TRAPPC12Q8WVT3 735 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 ZBTB10Q96DT7 871 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 DUSP9Q99956 384 aaKnown RBP4.09□□□□□ -1.75
RTN4-208ENST00000404909 IKZF4Q9H2S9 585 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 SMARCAD1Q9H4L7 1026 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 OLFML3Q9NRN5 406 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 MAGEC2Q9UBF1 373 aaPredicted RBP4.09□□□□□ -1.75
RTN4-208ENST00000404909 PLXNA1Q9UIW2 1896 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 RBM47A0AV96 593 aaKnown RBP4.09□□□□□ -1.75
RTN4-208ENST00000404909 KCNJ18B7U540 433 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 CLIC2O15247 247 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 LGALS2P05162 132 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 TPM3P06753 285 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 ZNF865P0CJ78 1059 aaPredicted RBP4.09□□□□□ -1.75
RTN4-208ENST00000404909 PLS3P13797 630 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 ELNP15502 786 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 ZNF131P52739 623 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 SMTNP53814 917 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 KCNJ12Q14500 433 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 PLCB4Q15147 1175 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 KNOP1Q1ED39 458 aaKnown RBP4.09□□□□□ -1.75
RTN4-208ENST00000404909 MFSD14CQ5VZR4 134 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 ZNF720Q7Z2F6 126 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 TLK2Q86UE8 772 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 METTL13Q8N6R0 699 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 MCPH1Q8NEM0 835 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 AFAP1L1Q8TED9 768 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 NOC3LQ8WTT2 800 aaKnown RBP4.09□□□□□ -1.75
RTN4-208ENST00000404909 TRIB2Q92519 343 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 PDLIM2Q96JY6 352 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 PPP1R9BQ96SB3 815 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 POLR3FQ9H1D9 316 aaPredicted RBP4.09□□□□□ -1.75
RTN4-208ENST00000404909 VPS16Q9H269 839 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 RNPEPQ9H4A4 650 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 XPNPEP1Q9NQW7 623 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 TAB2Q9NYJ8 693 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 ERAP1Q9NZ08 941 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 SEL1LQ9UBV2 794 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 PCDHB13Q9Y5F0 798 aa4.09□□□□□ -1.75
RTN4-208ENST00000404909 H3BRB1 525 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 N4BP3O15049 544 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 CBFA2T2O43439 604 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 PPFIA4O75335 1185 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 LGR5O75473 907 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 HOXD13P35453 343 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 MTIF2P46199 727 aaKnown RBP4.09□□□□□ -1.76
RTN4-208ENST00000404909 BEX3Q00994 111 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 LRRC63Q05C16 580 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 TRIM32Q13049 653 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 ADAM9Q13443 819 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 KRT31Q15323 416 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 DGKDQ16760 1214 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 TCP11X2Q5H9J9 407 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 CDKAL1Q5VV42 579 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 STXBP4Q6ZWJ1 553 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 PLPPR4Q7Z2D5 763 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 LRRC71Q8N4P6 559 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 ATP8B4Q8TF62 1192 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 BBXQ8WY36 941 aaPredicted RBP4.09□□□□□ -1.76
RTN4-208ENST00000404909 KIFAP3Q92845 792 aa4.09□□□□□ -1.76
RTN4-208ENST00000404909 ZNF668Q96K58 619 aaPredicted RBP4.09□□□□□ -1.76
RTN4-208ENST00000404909 FAM167AQ96KS9 214 aa4.09□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms