RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 DUX4L6P0CJ89 424 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 DUX4L7P0CJ90 424 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 MDM2Q00987 491 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 TBC1D10BQ4KMP7 808 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 SLFN12LQ6IEE8 588 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 SLC30A9Q6PML9 568 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 C4orf50Q6ZRC1 276 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 DNAJC17Q9NVM6 304 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 PPARGC1AQ9UBK2 798 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 DUX4Q9UBX2 424 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 KRT8P05787 483 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 MAGOHP61326 146 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 MRPS25P82663 173 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 TMPRSS15P98073 1019 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 KCTD2Q14681 263 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 SPOUT1Q5T280 376 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 RNF207Q6ZRF8 634 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 ZC3H18Q86VM9 953 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 ERICH1Q86X53 443 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 TMCO5AQ8N6Q1 288 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 SKA2Q8WVK7 121 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 LRRC4Q9HBW1 653 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 HNRNPCL2B2RXH8 293 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 ANKRD65E5RJM6 399 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 GSTA4O15217 222 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 CFLARO15519 480 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 HNRNPCL1O60812 293 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 CHGBP05060 677 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 CCND2P30279 289 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 PRCPP42785 496 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 GPC5P78333 572 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 PFKFB3Q16875 520 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 FAM160B2Q86V87 743 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 DYNLL2Q96FJ2 89 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 ALDH8A1Q9H2A2 487 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 G3BP2Q9UN86 482 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 A0A0G2JND7 137 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 KRT38O76015 456 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 TRPC1P48995 793 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 GADL1Q6ZQY3 521 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 MYLK4Q86YV6 388 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 ZC3H15Q8WU90 426 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 TTC1Q99614 292 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 POLR3CQ9BUI4 534 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 TRIM15Q9C019 465 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 KLC2Q9H0B6 622 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 CNOT8Q9UFF9 292 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 ANAPC7Q9UJX3 599 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 INTUQ9ULD6 942 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 TRIM49BA6NDI0 452 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 FAM187AA6NFU0 413 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 PPEF1O14829 653 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 CTIFO43310 598 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 DNAJC6O75061 913 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 MCF2P10911 925 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 CDK8P49336 464 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 MYO1EQ12965 1108 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 TFDP2Q14188 446 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 TMTC4Q5T4D3 741 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 NLGN1Q8N2Q7 840 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 RUBCNQ92622 972 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 TTC17Q96AE7 1141 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 PI4KBQ9UBF8 816 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 AKT3Q9Y243 479 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 TARSL2A2RTX5 802 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 USP17L3A6NCW0 530 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 USP17L4A6NCW7 530 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 KCNJ6P48051 423 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 PMS2P54278 862 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 KLHL38Q2WGJ6 581 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 TBC1D9BQ66K14 1250 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 USP17L1Q7RTZ2 530 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 TLK2Q86UE8 772 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 COQ7Q99807 217 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 KIFC3Q9BVG8 833 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 APOL6Q9BWW8 343 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 TAF1DQ9H5J8 278 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 GJB4Q9NTQ9 266 aa10.96□□□□□ -0.65
LIMCH1-203ENST00000396595 A0A1W2PQC6 194 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 ARHGAP10A1A4S6 786 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 CFAP73A6NFT4 308 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 HSPA4LO95757 839 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 PSAPP07602 524 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 CD58P19256 250 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 CDR2Q01850 454 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 MECOMQ03112 1051 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 SLC44A4Q53GD3 710 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 TAF1BQ53T94 588 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 FSCBQ5H9T9 825 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 BEND6Q5SZJ8 279 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 NLRP14Q86W24 1093 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 COG1Q8WTW3 980 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 SLITRK6Q9H5Y7 841 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 ADAM22Q9P0K1 906 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 NEO1Q92859 1461 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 LDHAP00338 332 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 HDLBPQ00341 1268 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 KLC3Q6P597 504 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms