RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NOC2LQ9Y3T9 749 aaKnown RBP12.65□□□□□ -0.38
SYNPO-202ENST00000394243 PPM1NQ8N819 430 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 CABLES1Q8TDN4 633 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 TBCKQ8TEA7 893 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 FAM81BQ96LP2 452 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 HPCAL4Q9UM19 191 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 MAST3O60307 1309 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 MIF4GDA9UHW6 222 aaKnown RBP12.65□□□□□ -0.38
SYNPO-202ENST00000394243 WDR47O94967 919 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 MTF1Q14872 753 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 NCAPHQ15003 741 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 NOD2Q9HC29 1040 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 CEP72Q9P209 647 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 IRAK1P51617 712 aa12.65□□□□□ -0.39
SYNPO-202ENST00000394243 HOOK2Q96ED9 719 aa12.65□□□□□ -0.39
SYNPO-202ENST00000394243 TRPM2O94759 1503 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 IL10P22301 178 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 DAB2IPQ5VWQ8 1189 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 CDR2LQ86X02 465 aaPredicted RBP12.64□□□□□ -0.39
SYNPO-202ENST00000394243 PLD3Q8IV08 490 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 ADPGKQ9BRR6 497 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 NPHS2Q9NP85 383 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 KIF21AQ7Z4S6 1674 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 EIF4A1P60842 406 aaKnown RBP12.64□□□□□ -0.39
SYNPO-202ENST00000394243 ATP6V0A1Q93050 837 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 ABCF3Q9NUQ8 709 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 SFMBT1Q9UHJ3 866 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 NCKAP5LQ9HCH0 1330 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 YTHDC2Q9H6S0 1430 aaKnown RBP12.64□□□□□ -0.39
SYNPO-202ENST00000394243 WDR7Q9Y4E6 1490 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 TEX33O43247 280 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 LRRC24Q50LG9 513 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 FLCNQ8NFG4 579 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 CHURC1Q8WUH1 139 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 UBN1Q9NPG3 1134 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 SLC13A4Q9UKG4 626 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 TRAPPC8Q9Y2L5 1435 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 SOX5P35711 763 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 MXI1P50539 228 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 ANKRD36BP1Q96IX9 119 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 THOC2Q8NI27 1593 aaKnown RBP12.64□□□□□ -0.39
SYNPO-202ENST00000394243 PCDH11XQ9BZA7 1347 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 PCDH11YQ9BZA8 1340 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 PMLP29590 882 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 CEBPAP49715 358 aaPredicted RBP12.64□□□□□ -0.39
SYNPO-202ENST00000394243 IRX2Q9BZI1 471 aaPredicted RBP12.64□□□□□ -0.39
SYNPO-202ENST00000394243 GID8Q9NWU2 228 aa12.64□□□□□ -0.39
SYNPO-202ENST00000394243 PJA2O43164 708 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 SERPINB1P30740 379 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 EP400NLQ6ZTU2 488 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 HACE1Q8IYU2 909 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 CCNYL1Q8N7R7 359 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 C10orf88Q9H8K7 445 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.63□□□□□ -0.39
SYNPO-202ENST00000394243 NBPF26B4DH59 902 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 MED7O43513 233 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 PDE5AO76074 875 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 ATP2B4P23634 1241 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 KRT39Q6A163 491 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 KRT26Q7Z3Y9 468 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 NBPF15Q8N660 670 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 AMACRQ9UHK6 382 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 MRPL11Q9Y3B7 192 aaKnown RBP12.63□□□□□ -0.39
SYNPO-202ENST00000394243 PCDHA1Q9Y5I3 950 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 BCAMP50895 628 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 BLVRAP53004 296 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 CCDC137Q6PK04 289 aaKnown RBP12.63□□□□□ -0.39
SYNPO-202ENST00000394243 GALNT4Q8N4A0 578 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 KIAA0586Q9BVV6 1533 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 FAM187AA6NFU0 413 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 IGF2BP3O00425 579 aaKnown RBP eCLIP12.63□□□□□ -0.39
SYNPO-202ENST00000394243 CD58P19256 250 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 PSMA2P25787 234 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 CHRNA3P32297 505 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 S100A5P33763 92 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 CDO1Q16878 200 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 OR6B2Q6IFH4 312 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 NOP9Q86U38 636 aaKnown RBP12.63□□□□□ -0.39
SYNPO-202ENST00000394243 AGR3Q8TD06 166 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 MS4A14Q96JA4 679 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 CCT8L1PA6NM43 557 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 XPO1O14980 1071 aaKnown RBP12.63□□□□□ -0.39
SYNPO-202ENST00000394243 PLA2G4BP0C869 781 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 ALAS1P13196 640 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 BYSLQ13895 437 aaKnown RBP12.63□□□□□ -0.39
SYNPO-202ENST00000394243 DDB1Q16531 1140 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 LRRC8BQ6P9F7 803 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 ZBED8Q8IZ13 594 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 NR1H4Q96RI1 486 aaPredicted RBP12.63□□□□□ -0.39
SYNPO-202ENST00000394243 THTPAQ9BU02 230 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 KMT5AQ9NQR1 393 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 M0QZ92 97 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 ANP32DO95626 131 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 PDIA2Q13087 525 aaKnown RBP12.63□□□□□ -0.39
SYNPO-202ENST00000394243 GPS1Q13098 491 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 CYB5D1Q6P9G0 228 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 FMR1NBQ8N0W7 255 aaPredicted RBP12.63□□□□□ -0.39
SYNPO-202ENST00000394243 SPDYE1Q8NFV5 336 aaPredicted RBP12.63□□□□□ -0.39
SYNPO-202ENST00000394243 CCT7Q99832 543 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 WWP1Q9H0M0 922 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms