RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 USP17L4A6NCW7 530 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 PPP1R12AO14974 1030 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 ZNF189O75820 626 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 ACSL3O95573 720 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 MECOMQ03112 1051 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 KCNA1Q09470 495 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 ACBD5Q5T8D3 534 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 GRAMD4Q6IC98 578 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 C16orf87Q6PH81 154 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 USP17L1Q7RTZ2 530 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 PATL1Q86TB9 770 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 ATG3Q9NT62 314 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 GTSE1Q9NYZ3 720 aa13.68□□□□□ -0.22
CCDC88C-204ENST00000389857 E5RI56 91 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 FOXD4Q12950 439 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 TOGARAM2Q6ZUX3 1019 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 PAGE5Q96GU1 130 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 EDEM3Q9BZQ6 932 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 TRPC5Q9UL62 973 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 E9PMD0 336 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 GYG2O15488 501 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 VSTM4Q8IW00 320 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 SPATA17Q96L03 361 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 TOPORSQ9NS56 1045 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 PYCARDQ9ULZ3 195 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 STK25O00506 426 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 ARHGEF9O43307 516 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 CTIFO43310 598 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 KIF23Q02241 960 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 MORF4L2Q15014 288 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 ULK4Q96C45 1275 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 PAWRQ96IZ0 340 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 FARP1Q9Y4F1 1045 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 AARSP49588 968 aaKnown RBP eCLIP13.67□□□□□ -0.223e-6■■■■■ 61.8
CCDC88C-204ENST00000389857 TEKT4Q8WW24 435 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 DBNDD1Q9H9R9 158 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 PER1O15534 1290 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 MYO1DO94832 1006 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 EMBQ6PCB8 327 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 MB21D1Q8N884 522 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 TTC17Q96AE7 1141 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 SPTLC3Q9NUV7 552 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 ABT1Q9ULW3 272 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 ADAMTS12P58397 1594 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 RPAP1Q9BWH6 1393 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 CLASP1Q7Z460 1538 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 EPM2AIP1Q7L775 607 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 EEPD1Q7L9B9 569 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 CATSPER4Q7RTX7 472 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 ACAP3Q96P50 834 aa13.67□□□□□ -0.22
CCDC88C-204ENST00000389857 PHKA2P46019 1235 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 AP3B2Q13367 1082 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 TTC23LQ6PF05 361 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 RASSF3Q86WH2 238 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 TMCO5AQ8N6Q1 288 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 EXOC4Q96A65 974 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 SLC7A5Q01650 507 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 EFTUD2Q15029 972 aaKnown RBP eCLIP13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 UBE2SQ16763 222 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 CYTH2Q99418 400 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 NGRNQ9NPE2 291 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 POLIQ9UNA4 740 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 INPP5FQ9Y2H2 1132 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 DPYSL4O14531 572 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 KCNQ3O43525 872 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 TFDP2Q14188 446 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 ZNF699Q32M78 642 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 C11orf57Q6ZUT1 292 aaPredicted RBP13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 BEST2Q8NFU1 509 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 PPARGC1AQ9UBK2 798 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 NEMP1O14524 444 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 ERFEQ4G0M1 354 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 GRAMD1CQ8IYS0 662 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 TTC30BQ8N4P2 665 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 SLC26A7Q8TE54 656 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 SLC10A4Q96EP9 437 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 NRBP1Q9UHY1 535 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 MIF4GDA9UHW6 222 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 HUS1O60921 280 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 HDAC4P56524 1084 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 PEX3P56589 373 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 USP17L2Q6R6M4 530 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 IL17REQ8NFR9 667 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 SFMBT1Q9UHJ3 866 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 A0A0G2JND7 137 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 GOLGA8IPA6NC78 632 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 GOLGA8JA6NMD2 632 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 FGGP02679 453 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 GPC3P51654 580 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 CTTNQ14247 550 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 RBBP7Q16576 425 aa13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 OTUB1Q96FW1 271 aaPredicted RBP13.66□□□□□ -0.22
CCDC88C-204ENST00000389857 PPP6R3Q5H9R7 873 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 NUGGCQ68CJ6 796 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 LINC00301Q8NCQ3 95 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 NDE1Q9NXR1 346 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 ANAPC7Q9UJX3 599 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 PLAAQ9Y263 795 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 PTPRTO14522 1441 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 VGLL3A8MV65 326 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms