RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ASTN2O75129 1339 aaPredicted RBP14.65□□□□□ -0.06
CCDC3-202ENST00000378839 PLA2G6O60733 806 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 NAP1L1P55209 391 aaKnown RBP14.65□□□□□ -0.06
CCDC3-202ENST00000378839 MUM1L1Q5H9M0 696 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 MAEAQ7L5Y9 396 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 ZSWIM2Q8NEG5 633 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 AENQ8WTP8 325 aaKnown RBP14.65□□□□□ -0.06
CCDC3-202ENST00000378839 STRA6Q9BX79 667 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 GPR88Q9GZN0 384 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 PARVGQ9HBI0 331 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 GCNT4Q9P109 453 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 FEM1BQ9UK73 627 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 SLC16A3O15427 465 aaKnown RBP14.65□□□□□ -0.06
CCDC3-202ENST00000378839 MEI1Q5TIA1 1274 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 MTMR14Q8NCE2 650 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 TEPSINQ96N21 525 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 MXRA8Q9BRK3 442 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 SELENOOQ9BVL4 669 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 STK24Q9Y6E0 443 aa14.65□□□□□ -0.06
CCDC3-202ENST00000378839 RPTORQ8N122 1335 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 TCP1P17987 556 aaKnown RBP14.64□□□□□ -0.07
CCDC3-202ENST00000378839 MRPS9P82933 396 aaKnown RBP14.64□□□□□ -0.07
CCDC3-202ENST00000378839 PLS1Q14651 629 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 KCNH7Q9NS40 1196 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 DMAC2Q9NW81 257 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 ZNRF3Q9ULT6 936 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 ZSCAN5CA6NGD5 496 aaPredicted RBP14.64□□□□□ -0.07
CCDC3-202ENST00000378839 EIF3DO15371 548 aaKnown RBP eCLIP14.64□□□□□ -0.07
CCDC3-202ENST00000378839 TRIM49P0CI25 452 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 TRIM49CP0CI26 452 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 ZBTB48P10074 688 aaPredicted RBP14.64□□□□□ -0.07
CCDC3-202ENST00000378839 GAP43P17677 238 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 RNASE9P60153 205 aaKnown RBP14.64□□□□□ -0.07
CCDC3-202ENST00000378839 GBP3Q9H0R5 595 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 DEFB129Q9H1M3 183 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 AGPAT3Q9NRZ7 376 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 NAGPAQ9UK23 515 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 CCPG1Q9ULG6 757 aa14.64□□□□□ -0.07
CCDC3-202ENST00000378839 HIP1RO75146 1068 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 ICAM1P05362 532 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 TUBBP07437 444 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 EPB41P11171 864 aaKnown RBP14.63□□□□□ -0.07
CCDC3-202ENST00000378839 TNNT3P45378 269 aaPredicted RBP14.63□□□□□ -0.07
CCDC3-202ENST00000378839 CYP2J2P51589 502 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 ITIH3Q06033 890 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 TRADDQ15628 312 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 FKBP1CQ5VVH2 108 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 FAM83AQ86UY5 434 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 FAM186BQ8IYM0 893 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 DDX3XO00571 662 aaKnown RBP eCLIP14.63□□□□□ -0.07
CCDC3-202ENST00000378839 PPP1R37O75864 691 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 FAM160B2Q86V87 743 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 HOOK2Q96ED9 719 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 WNK4Q96J92 1243 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 DLG4P78352 724 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 RASA3Q14644 834 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 ODR4Q5SWX8 454 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 GBP6Q6ZN66 633 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 LNX1Q8TBB1 728 aaPredicted RBP14.63□□□□□ -0.07
CCDC3-202ENST00000378839 CCDC102AQ96A19 550 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 INPP4AQ96PE3 977 aaPredicted RBP14.63□□□□□ -0.07
CCDC3-202ENST00000378839 SPAG5Q96R06 1193 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 NACC1Q96RE7 527 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 RAVER2Q9HCJ3 691 aaKnown RBP14.63□□□□□ -0.07
CCDC3-202ENST00000378839 HOMER2Q9NSB8 354 aa14.63□□□□□ -0.07
CCDC3-202ENST00000378839 GFPT2O94808 682 aa14.62□□□□□ -0.07
CCDC3-202ENST00000378839 GLI1P08151 1106 aa14.62□□□□□ -0.07
CCDC3-202ENST00000378839 PRKCIP41743 596 aa14.62□□□□□ -0.07
CCDC3-202ENST00000378839 AARSP49588 968 aaKnown RBP eCLIP14.62□□□□□ -0.07
CCDC3-202ENST00000378839 CPXCR1Q8N123 301 aa14.62□□□□□ -0.07
CCDC3-202ENST00000378839 LRRC57Q8N9N7 239 aa14.62□□□□□ -0.07
CCDC3-202ENST00000378839 TEKT3Q9BXF9 490 aa14.62□□□□□ -0.07
CCDC3-202ENST00000378839 RPL13P26373 211 aaKnown RBP14.62□□□□□ -0.07
CCDC3-202ENST00000378839 FAM193AP78312 1265 aa14.62□□□□□ -0.07
CCDC3-202ENST00000378839 NFIL3Q16649 462 aa14.62□□□□□ -0.07
CCDC3-202ENST00000378839 UGCGQ16739 394 aa14.62□□□□□ -0.07
CCDC3-202ENST00000378839 FAM178BQ8IXR5 827 aa14.62□□□□□ -0.07
CCDC3-202ENST00000378839 RDH13Q8NBN7 331 aa14.62□□□□□ -0.07
CCDC3-202ENST00000378839 METTL14Q9HCE5 456 aaKnown RBP14.62□□□□□ -0.07
CCDC3-202ENST00000378839 MYOZ2Q9NPC6 264 aa14.62□□□□□ -0.07
CCDC3-202ENST00000378839 PSMC2P35998 433 aaKnown RBP14.61□□□□□ -0.07
CCDC3-202ENST00000378839 GGCXP38435 758 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 FMO5P49326 533 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 ALKBH5Q6P6C2 394 aaKnown RBP14.61□□□□□ -0.07
CCDC3-202ENST00000378839 AGBL3Q8NEM8 1001 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 VIPAS39Q9H9C1 493 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 ATP9AO75110 1047 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 TKFCQ3LXA3 575 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 TBC1D10BQ4KMP7 808 aaPredicted RBP14.61□□□□□ -0.07
CCDC3-202ENST00000378839 TSEN2Q8NCE0 465 aaKnown RBP14.61□□□□□ -0.07
CCDC3-202ENST00000378839 SLC30A5Q8TAD4 765 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 LMO3Q8TAP4 145 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 TAAR1Q96RJ0 339 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 AGO4Q9HCK5 861 aaKnown RBP14.61□□□□□ -0.07
CCDC3-202ENST00000378839 FBXL5Q9UKA1 691 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 TELO2Q9Y4R8 837 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 ZHX2Q9Y6X8 837 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 ESYT3A0FGR9 886 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 ASNSP08243 561 aa14.61□□□□□ -0.07
CCDC3-202ENST00000378839 GUCY2CP25092 1073 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms