RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 FGFR1P11362 822 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 PDE4AP27815 886 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 ERVFC1P60507 584 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 APOBRQ0VD83 1088 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 ITGB3BPQ13352 177 aaPredicted RBP16.04■□□□□ 0.16
PTCH1-202ENST00000375271 MTMR3Q13615 1198 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 RNF20Q5VTR2 975 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 WWC2Q6AWC2 1192 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 ANKRD54Q6NXT1 300 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 PLA2G4DQ86XP0 818 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 CYP2W1Q8TAV3 490 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 SNX27Q96L92 541 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 LRRC2Q9BYS8 371 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 TMEM117Q9H0C3 514 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 ELAC1Q9H777 363 aaKnown RBP16.04■□□□□ 0.16
PTCH1-202ENST00000375271 NAP1L2Q9ULW6 460 aaPredicted RBP16.04■□□□□ 0.16
PTCH1-202ENST00000375271 AKT3Q9Y243 479 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 SAMM50Q9Y512 469 aa16.04■□□□□ 0.16
PTCH1-202ENST00000375271 SMCO2A6NFE2 343 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 C9IYK1 514 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 MGEA5O60502 916 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 AVPR2P30518 371 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 RBM10P98175 930 aaKnown RBP16.03■□□□□ 0.16
PTCH1-202ENST00000375271 PLCB3Q01970 1234 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 TCF15Q12870 199 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 SMC1AQ14683 1233 aaKnown RBP16.03■□□□□ 0.16
PTCH1-202ENST00000375271 RTN1Q16799 776 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 SWSAP1Q6NVH7 229 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 KIAA0319LQ8IZA0 1049 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 BBXQ8WY36 941 aaPredicted RBP16.03■□□□□ 0.16
PTCH1-202ENST00000375271 SUSD6Q92537 303 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 NECTIN4Q96NY8 510 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 ZNF577Q9BSK1 485 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 MFSD1Q9H3U5 465 aa16.03■□□□□ 0.16
PTCH1-202ENST00000375271 SLC27A2O14975 620 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 ATG7O95352 703 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 VTNP04004 478 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 PSAPP07602 524 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 SREBF1P36956 1147 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 NUBP1P53384 320 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 VCPP55072 806 aaKnown RBP16.02■□□□□ 0.16
PTCH1-202ENST00000375271 FGD1P98174 961 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 SETQ01105 290 aaPredicted RBP16.02■□□□□ 0.16
PTCH1-202ENST00000375271 KCNT2Q6UVM3 1135 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 NIPA1Q7RTP0 329 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 FAM228AQ86W67 206 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 CCDC60Q8IWA6 550 aaPredicted RBP16.02■□□□□ 0.16
PTCH1-202ENST00000375271 UBALD2Q8IYN6 164 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 FAM167AQ96KS9 214 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 ANO2Q9NQ90 1003 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 SPG21Q9NZD8 308 aa16.02■□□□□ 0.16
PTCH1-202ENST00000375271 KMT2EQ8IZD2 1858 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 CNTNAP5Q8WYK1 1306 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 IPO5O00410 1097 aaKnown RBP16.01■□□□□ 0.15
PTCH1-202ENST00000375271 MEIS1O00470 390 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 FSCN2O14926 492 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 MAGEB2O15479 319 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 ZBTB43O43298 467 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 CREB3L3Q68CJ9 461 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 MCTP2Q6DN12 878 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 ABHD15Q6UXT9 468 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 SMAP1Q8IYB5 467 aaPredicted RBP16.01■□□□□ 0.15
PTCH1-202ENST00000375271 ZNF710Q8N1W2 664 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 KREMEN2Q8NCW0 462 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 VN1R2Q8NFZ6 395 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 RASGRP4Q8TDF6 673 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 CCDC12Q8WUD4 166 aaPredicted RBP16.01■□□□□ 0.15
PTCH1-202ENST00000375271 TMEM40Q8WWA1 233 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 RIPOR3Q96MK2 946 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 MRPL9Q9BYD2 267 aaKnown RBP16.01■□□□□ 0.15
PTCH1-202ENST00000375271 CDHR5Q9HBB8 845 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 TBC1D22BQ9NU19 505 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 HCSTQ9UBK5 93 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 EVPLQ92817 2033 aa16.01■□□□□ 0.15
PTCH1-202ENST00000375271 IGKV6D-21A0A0A0MT36 114 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 GOLGA8AA7E2F4 631 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 GOLGA8BA8MQT2 603 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 H0Y858 1186 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 CCNE2O96020 404 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 MTHFRP42898 656 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 ITIH3Q06033 890 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 JAKMIP3Q5VZ66 844 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 TMEM184AQ6ZMB5 413 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 SGMS1Q86VZ5 419 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 TDRD5Q8NAT2 981 aaKnown RBP16■□□□□ 0.15
PTCH1-202ENST00000375271 ASIC4Q96FT7 647 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 TMEM169Q96HH4 297 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 CWH43Q9H720 699 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 BARHL2Q9NY43 387 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 SORCS3Q9UPU3 1222 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 V9GY48 417 aaPredicted RBP16■□□□□ 0.15
PTCH1-202ENST00000375271 ZDBF2Q9HCK1 2354 aa16■□□□□ 0.15
PTCH1-202ENST00000375271 MYH9P35579 1960 aaKnown RBP15.99■□□□□ 0.15
PTCH1-202ENST00000375271 CARNS1A5YM72 827 aa15.99■□□□□ 0.15
PTCH1-202ENST00000375271 HIDE1A8MVS5 230 aa15.99■□□□□ 0.15
PTCH1-202ENST00000375271 C22orf31O95567 290 aa15.99■□□□□ 0.15
PTCH1-202ENST00000375271 ALDH7A1P49419 539 aaKnown RBP15.99■□□□□ 0.15
PTCH1-202ENST00000375271 CLCN3P51790 818 aa15.99■□□□□ 0.15
PTCH1-202ENST00000375271 NLRP11P59045 1033 aaKnown RBP15.99■□□□□ 0.15
PTCH1-202ENST00000375271 ZNF746Q6NUN9 644 aaPredicted RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms