RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 HYIQ5T013 277 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 MAP3K21Q5TCX8 1036 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 ZNF467Q7Z7K2 595 aaPredicted RBP17.13■□□□□ 0.33
CCDC40-202ENST00000374876 EPC1Q9H2F5 836 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 HAUS4Q9H6D7 363 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.13■□□□□ 0.33
CCDC40-202ENST00000374876 FAM53CQ9NYF3 392 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 GUCA1BQ9UMX6 200 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 IPO7O95373 1038 aaKnown RBP17.12■□□□□ 0.33
CCDC40-202ENST00000374876 EIF2AK2P19525 551 aaKnown RBP17.12■□□□□ 0.33
CCDC40-202ENST00000374876 EHHADHQ08426 723 aa17.12■□□□□ 0.33
CCDC40-202ENST00000374876 MCTP2Q6DN12 878 aa17.12■□□□□ 0.33
CCDC40-202ENST00000374876 SLFN12Q8IYM2 578 aa17.12■□□□□ 0.33
CCDC40-202ENST00000374876 MYOCDQ8IZQ8 938 aa17.12■□□□□ 0.33
CCDC40-202ENST00000374876 UIMC1Q96RL1 719 aa17.12■□□□□ 0.33
CCDC40-202ENST00000374876 NDST4Q9H3R1 872 aa17.12■□□□□ 0.33
CCDC40-202ENST00000374876 ZSWIM4Q9H7M6 989 aa17.12■□□□□ 0.33
CCDC40-202ENST00000374876 HMX1Q9NP08 348 aaPredicted RBP17.12■□□□□ 0.33
CCDC40-202ENST00000374876 KCNMB3Q9NPA1 279 aa17.12■□□□□ 0.33
CCDC40-202ENST00000374876 PANK4Q9NVE7 773 aa17.12■□□□□ 0.33
CCDC40-202ENST00000374876 MAP3K20Q9NYL2 800 aaKnown RBP17.12■□□□□ 0.33
CCDC40-202ENST00000374876 PUF60Q9UHX1 559 aaKnown RBP17.12■□□□□ 0.33
CCDC40-202ENST00000374876 KIAA1024Q9UPX6 916 aa17.12■□□□□ 0.33
CCDC40-202ENST00000374876 MYH7BA7E2Y1 1941 aa17.12■□□□□ 0.33
CCDC40-202ENST00000374876 RPTORQ8N122 1335 aa17.12■□□□□ 0.33
CCDC40-202ENST00000374876 CYP3A7-CYP3A51PA0A087WV96 503 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 ASB14A6NK59 587 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 ZSCAN20P17040 1043 aaPredicted RBP17.11■□□□□ 0.33
CCDC40-202ENST00000374876 CYP3A7P24462 503 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 COASYQ13057 564 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 LRRC41Q15345 812 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 MAN2A1Q16706 1144 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 ARHGEF16Q5VV41 709 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 KIAA1328Q86T90 577 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 CCDC170Q8IYT3 715 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 DNERQ8NFT8 737 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 NSUN6Q8TEA1 469 aaKnown RBP17.11■□□□□ 0.33
CCDC40-202ENST00000374876 DNAJC19Q96DA6 116 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 ZFP91Q96JP5 570 aaPredicted RBP17.11■□□□□ 0.33
CCDC40-202ENST00000374876 NHEJ1Q9H9Q4 299 aaPredicted RBP17.11■□□□□ 0.33
CCDC40-202ENST00000374876 SYNGAP1Q96PV0 1343 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 SLC26A4O43511 780 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 CYBAP13498 195 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 MOXD1Q6UVY6 613 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 MSL3Q8N5Y2 521 aaKnown RBP17.11■□□□□ 0.33
CCDC40-202ENST00000374876 SAMD3Q8N6K7 520 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 MAF1Q9H063 256 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 ZHX1Q9UKY1 873 aaPredicted RBP17.11■□□□□ 0.33
CCDC40-202ENST00000374876 FHOD1Q9Y613 1164 aa17.11■□□□□ 0.33
CCDC40-202ENST00000374876 RBBP6Q7Z6E9 1792 aaKnown RBP17.1■□□□□ 0.33
CCDC40-202ENST00000374876 E9PMD0 336 aa17.1■□□□□ 0.33
CCDC40-202ENST00000374876 PIK3CDO00329 1044 aa17.1■□□□□ 0.33
CCDC40-202ENST00000374876 NKRFO15226 690 aaKnown RBP eCLIP17.1■□□□□ 0.33
CCDC40-202ENST00000374876 PLA2G4BP0C869 781 aa17.1■□□□□ 0.33
CCDC40-202ENST00000374876 TUBB4BP68371 445 aa17.1■□□□□ 0.33
CCDC40-202ENST00000374876 ARHGAP4P98171 946 aa17.1■□□□□ 0.33
CCDC40-202ENST00000374876 FAM26FQ5R3K3 315 aa17.1■□□□□ 0.33
CCDC40-202ENST00000374876 CCDC122Q5T0U0 273 aa17.1■□□□□ 0.33
CCDC40-202ENST00000374876 FOXR2Q6PJQ5 311 aa17.1■□□□□ 0.33
CCDC40-202ENST00000374876 CCDC65Q8IXS2 484 aa17.1■□□□□ 0.33
CCDC40-202ENST00000374876 PARD6BQ9BYG5 372 aa17.1■□□□□ 0.33
CCDC40-202ENST00000374876 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.1■□□□□ 0.33
CCDC40-202ENST00000374876 PXMP2Q9NR77 195 aa17.1■□□□□ 0.33
CCDC40-202ENST00000374876 TRIM10Q9UDY6 481 aa17.1■□□□□ 0.33
CCDC40-202ENST00000374876 POTEB3A0JP26 581 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 SPDYE3A6NKU9 549 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 ZRANB2O95218 330 aaKnown RBP eCLIP17.09■□□□□ 0.33
CCDC40-202ENST00000374876 ZNF865P0CJ78 1059 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-202ENST00000374876 PNMA6AP0CW24 399 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-202ENST00000374876 ACVR2BQ13705 512 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 WHAMMP3Q1A5X7 153 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 POTEBQ6S5H4 581 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 LRRC55Q6ZSA7 311 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 FBXO16Q8IX29 292 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-202ENST00000374876 EHBP1Q8NDI1 1231 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 GLIS3Q8NEA6 775 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 MBOAT7Q96N66 472 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 DEFB118Q96PH6 123 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 PDGFCQ9NRA1 345 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 EIF3CLB5ME19 914 aaKnown RBP17.09■□□□□ 0.33
CCDC40-202ENST00000374876 KRT86O43790 486 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 NR3C2P08235 984 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 MYCLP12524 364 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-202ENST00000374876 CDK17Q00537 523 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 PRR16Q569H4 304 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 HAUS3Q68CZ6 603 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 ZNF662Q6ZS27 426 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 GPBP1Q86WP2 473 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 IL31RAQ8NI17 732 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 MORC4Q8TE76 937 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 JAKMIP2Q96AA8 810 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 EIF3CQ99613 913 aaKnown RBP17.09■□□□□ 0.33
CCDC40-202ENST00000374876 TMEM106CQ9BVX2 250 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 KATNBL1Q9H079 304 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 ABHD16BQ9H3Z7 469 aa17.09■□□□□ 0.33
CCDC40-202ENST00000374876 FAM207AQ9NSI2 230 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-202ENST00000374876 KIAA0100Q14667 2235 aaKnown RBP17.08■□□□□ 0.33
CCDC40-202ENST00000374876 FOSP01100 380 aaPredicted RBP17.08■□□□□ 0.33
CCDC40-202ENST00000374876 KRT18P05783 430 aaKnown RBP17.08■□□□□ 0.33
CCDC40-202ENST00000374876 EDNRBP24530 442 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms