RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 CWH43Q9H720 699 aa15.78■□□□□ 0.12
VPS29-201ENST00000360579 SORCS3Q9UPU3 1222 aa15.78■□□□□ 0.12
VPS29-201ENST00000360579 PLXNA4Q9HCM2 1894 aa15.78■□□□□ 0.12
VPS29-201ENST00000360579 GSPT1P15170 499 aaKnown RBP15.77■□□□□ 0.12
VPS29-201ENST00000360579 LIFRP42702 1097 aa15.77■□□□□ 0.12
VPS29-201ENST00000360579 ITIH3Q06033 890 aa15.77■□□□□ 0.12
VPS29-201ENST00000360579 LLGL2Q6P1M3 1020 aa15.77■□□□□ 0.12
VPS29-201ENST00000360579 ABI1Q8IZP0 508 aa15.77■□□□□ 0.12
VPS29-201ENST00000360579 CMTR1Q8N1G2 835 aaKnown RBP15.77■□□□□ 0.12
VPS29-201ENST00000360579 LRRC43Q8N309 656 aa15.77■□□□□ 0.12
VPS29-201ENST00000360579 CYP2W1Q8TAV3 490 aa15.77■□□□□ 0.12
VPS29-201ENST00000360579 TMEM40Q8WWA1 233 aa15.77■□□□□ 0.12
VPS29-201ENST00000360579 MAP4K1Q92918 833 aa15.77■□□□□ 0.12
VPS29-201ENST00000360579 ZNF558Q96NG5 402 aa15.77■□□□□ 0.12
VPS29-201ENST00000360579 AGO4Q9HCK5 861 aaKnown RBP15.77■□□□□ 0.12
VPS29-201ENST00000360579 TSHZ2Q9NRE2 1034 aa15.77■□□□□ 0.12
VPS29-201ENST00000360579 SLC12A7Q9Y666 1083 aa15.77■□□□□ 0.12
VPS29-201ENST00000360579 SH2B2O14492 632 aaPredicted RBP15.76■□□□□ 0.11
VPS29-201ENST00000360579 SGSM2O43147 1006 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 ARP10275 920 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 FGFR1P11362 822 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 APOBRQ0VD83 1088 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 ITGB3BPQ13352 177 aaPredicted RBP15.76■□□□□ 0.11
VPS29-201ENST00000360579 BMS1Q14692 1282 aaKnown RBP15.76■□□□□ 0.11
VPS29-201ENST00000360579 PPP1R18Q6NYC8 613 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 PDXDC2PQ6P474 469 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 KCNT2Q6UVM3 1135 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 ABHD15Q6UXT9 468 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 TMC7Q7Z402 723 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 ADAM7Q9H2U9 754 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 CDHR5Q9HBB8 845 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 ZNF302Q9NR11 478 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 HCSTQ9UBK5 93 aa15.76■□□□□ 0.11
VPS29-201ENST00000360579 hCG_1642624A0A1W2PR95 340 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 HIDE1A8MVS5 230 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 MEIS1O00470 390 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 PDGFBP01127 241 aaPredicted RBP15.75■□□□□ 0.11
VPS29-201ENST00000360579 RXRAP19793 462 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 SP100P23497 879 aaPredicted RBP15.75■□□□□ 0.11
VPS29-201ENST00000360579 NBL1P41271 181 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 MTHFRP42898 656 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 SMC1AQ14683 1233 aaKnown RBP15.75■□□□□ 0.11
VPS29-201ENST00000360579 KIZQ2M2Z5 673 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 MIS18BP1Q6P0N0 1132 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 TMTC3Q6ZXV5 915 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 NIPA1Q7RTP0 329 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 FAM228AQ86W67 206 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 ZNF710Q8N1W2 664 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 CCDC82Q8N4S0 544 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 FANCBQ8NB91 859 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 OSMRQ99650 979 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 APOL5Q9BWW9 433 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 GLT8D2Q9H1C3 349 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 RIC8AQ9NPQ8 531 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 SPG21Q9NZD8 308 aa15.75■□□□□ 0.11
VPS29-201ENST00000360579 RBM8AQ9Y5S9 174 aaKnown RBP15.75■□□□□ 0.11
VPS29-201ENST00000360579 PTPRZ1P23471 2315 aaPredicted RBP15.75■□□□□ 0.11
VPS29-201ENST00000360579 FNDC1Q4ZHG4 1894 aaPredicted RBP15.74■□□□□ 0.11
VPS29-201ENST00000360579 CCNE2O96020 404 aa15.74■□□□□ 0.11
VPS29-201ENST00000360579 ZSCAN20P17040 1043 aaPredicted RBP15.74■□□□□ 0.11
VPS29-201ENST00000360579 ZNF76P36508 570 aa15.74■□□□□ 0.11
VPS29-201ENST00000360579 NAPAP54920 295 aa15.74■□□□□ 0.11
VPS29-201ENST00000360579 AP3B2Q13367 1082 aa15.74■□□□□ 0.11
VPS29-201ENST00000360579 DSC3Q14574 896 aa15.74■□□□□ 0.11
VPS29-201ENST00000360579 CCDC60Q8IWA6 550 aaPredicted RBP15.74■□□□□ 0.11
VPS29-201ENST00000360579 MRPL43Q8N983 215 aaKnown RBP15.74■□□□□ 0.11
VPS29-201ENST00000360579 BBXQ8WY36 941 aaPredicted RBP15.74■□□□□ 0.11
VPS29-201ENST00000360579 CASD1Q96PB1 797 aa15.74■□□□□ 0.11
VPS29-201ENST00000360579 ANO3Q9BYT9 981 aa15.74■□□□□ 0.11
VPS29-201ENST00000360579 CEP131Q9UPN4 1083 aa15.74■□□□□ 0.11
VPS29-201ENST00000360579 HCFC2Q9Y5Z7 792 aa15.74■□□□□ 0.11
VPS29-201ENST00000360579 SPTBN4Q9H254 2564 aa15.74■□□□□ 0.11
VPS29-201ENST00000360579 PRR23AA6NEV1 266 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 ZBTB42B2RXF5 422 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 C2CD4DB7Z1M9 353 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 hCG_1984214I3L0E3 225 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 C22orf31O95567 290 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 BRD1O95696 1058 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 SREBF1P36956 1147 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 ADCY7P51828 1080 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 MCTP2Q6DN12 878 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 SYNE3Q6ZMZ3 975 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 LRRC55Q6ZSA7 311 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 CKAP2LQ8IYA6 745 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 METTL13Q8N6R0 699 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 ZNF713Q8N859 430 aaPredicted RBP15.73■□□□□ 0.11
VPS29-201ENST00000360579 POMKQ9H5K3 350 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 DZANK1Q9NVP4 752 aa15.73■□□□□ 0.11
VPS29-201ENST00000360579 RIF1Q5UIP0 2472 aaKnown RBP15.72■□□□□ 0.11
VPS29-201ENST00000360579 CARNS1A5YM72 827 aa15.72■□□□□ 0.11
VPS29-201ENST00000360579 C2orf71A6NGG8 1288 aa15.72■□□□□ 0.11
VPS29-201ENST00000360579 DDX39AO00148 427 aaKnown RBP15.72■□□□□ 0.11
VPS29-201ENST00000360579 MAGEB2O15479 319 aa15.72■□□□□ 0.11
VPS29-201ENST00000360579 GPR32O75388 356 aa15.72■□□□□ 0.11
VPS29-201ENST00000360579 WWC2Q6AWC2 1192 aa15.72■□□□□ 0.11
VPS29-201ENST00000360579 ASTLQ6HA08 431 aaPredicted RBP15.72■□□□□ 0.11
VPS29-201ENST00000360579 SWSAP1Q6NVH7 229 aa15.72■□□□□ 0.11
VPS29-201ENST00000360579 ASCL5Q7RTU5 278 aa15.72■□□□□ 0.11
VPS29-201ENST00000360579 MICU3Q86XE3 530 aa15.72■□□□□ 0.11
VPS29-201ENST00000360579 ZDHHC14Q8IZN3 488 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms