RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 SHCBP1Q8NEM2 672 aa8.11□□□□□ -1.11
VPS13A-201ENST00000355766 SNX27Q96L92 541 aa8.11□□□□□ -1.11
VPS13A-201ENST00000355766 ZSCAN31Q96LW9 406 aaPredicted RBP8.11□□□□□ -1.11
VPS13A-201ENST00000355766 TTC14Q96N46 770 aa8.11□□□□□ -1.11
VPS13A-201ENST00000355766 TOX2Q96NM4 488 aa8.11□□□□□ -1.11
VPS13A-201ENST00000355766 NOL10Q9BSC4 688 aaKnown RBP8.11□□□□□ -1.11
VPS13A-201ENST00000355766 MTA3Q9BTC8 594 aa8.11□□□□□ -1.11
VPS13A-201ENST00000355766 MOV10L1Q9BXT6 1211 aaKnown RBP8.11□□□□□ -1.11
VPS13A-201ENST00000355766 KIAA1683Q9H0B3 1180 aa8.11□□□□□ -1.11
VPS13A-201ENST00000355766 EPHX3Q9H6B9 360 aa8.11□□□□□ -1.11
VPS13A-201ENST00000355766 CHMP5Q9NZZ3 219 aa8.11□□□□□ -1.11
VPS13A-201ENST00000355766 NRBP1Q9UHY1 535 aa8.11□□□□□ -1.11
VPS13A-201ENST00000355766 TBX21Q9UL17 535 aa8.11□□□□□ -1.11
VPS13A-201ENST00000355766 PALD1Q9ULE6 856 aa8.11□□□□□ -1.11
VPS13A-201ENST00000355766 CYP46A1Q9Y6A2 500 aa8.11□□□□□ -1.11
VPS13A-201ENST00000355766 DCDC2CA8MYV0 355 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 GPAA1O43292 621 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 PGK1P00558 417 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 F13BP05160 661 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 HLA-DOAP06340 250 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 HSP90AA1P07900 732 aaKnown RBP8.1□□□□□ -1.11
VPS13A-201ENST00000355766 HSPD1P10809 573 aaKnown RBP8.1□□□□□ -1.11
VPS13A-201ENST00000355766 IMMTQ16891 758 aaKnown RBP8.1□□□□□ -1.11
VPS13A-201ENST00000355766 PRAMEF19Q5SWL8 479 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 RUFY3Q7L099 469 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 C16orf59Q7L2K0 433 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 ABRAQ8N0Z2 381 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 FBXL6Q8N531 539 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 OSBP2Q969R2 916 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 MAML3Q96JK9 1138 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 NRSN2Q9GZP1 204 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 NKX2-4Q9H2Z4 354 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 RPAP3Q9H6T3 665 aaPredicted RBP8.1□□□□□ -1.11
VPS13A-201ENST00000355766 SLC28A3Q9HAS3 691 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 PIH1D3Q9NQM4 214 aaKnown RBP8.1□□□□□ -1.11
VPS13A-201ENST00000355766 AATFQ9NY61 560 aaKnown RBP eCLIP8.1□□□□□ -1.11
VPS13A-201ENST00000355766 SLC5A4Q9NY91 659 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 RAI14Q9P0K7 980 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 MSRAQ9UJ68 235 aa8.1□□□□□ -1.11
VPS13A-201ENST00000355766 CHD7Q9P2D1 2997 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 A0A1W2PP55 124 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 IDH1O75874 414 aaKnown RBP8.09□□□□□ -1.11
VPS13A-201ENST00000355766 BAG3O95817 575 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 WNT11O96014 354 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 CSF2RAP15509 400 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 TAL1P17542 331 aaPredicted RBP8.09□□□□□ -1.11
VPS13A-201ENST00000355766 ERCC3P19447 782 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 CASTP20810 708 aaKnown RBP8.09□□□□□ -1.11
VPS13A-201ENST00000355766 PTMSP20962 102 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 NUCB2P80303 420 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 ZNF423Q2M1K9 1284 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 CDPF1Q6NVV7 123 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 BLOC1S2Q6QNY1 142 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 CLEC17AQ6ZS10 378 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 CCNJLQ8IV13 435 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 GALNT12Q8IXK2 581 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 SHISA5Q8N114 240 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 C2CD4AQ8NCU7 369 aaPredicted RBP8.09□□□□□ -1.11
VPS13A-201ENST00000355766 RGS22Q8NE09 1264 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 TGFBRAP1Q8WUH2 860 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 JAKMIP1Q96N16 626 aaKnown RBP8.09□□□□□ -1.11
VPS13A-201ENST00000355766 AGXT2Q9BYV1 514 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 NACAP1Q9BZK3 213 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 SPATC1LQ9H0A9 340 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 STARD7Q9NQZ5 370 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 LIMCH1Q9UPQ0 1083 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 YBX2Q9Y2T7 364 aaKnown RBP8.09□□□□□ -1.11
VPS13A-201ENST00000355766 NCOR1O75376 2440 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 LRRC37A2A6NM11 1700 aa8.09□□□□□ -1.11
VPS13A-201ENST00000355766 MROH7Q68CQ1 1323 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 ZNF532Q9HCE3 1301 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 SYNRGQ9UMZ2 1314 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 A0A096LPE4 126 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 FAM95CA0A1B0GW59 222 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 A0A1W2PPZ6 126 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 FAM86C2PA6NEL3 165 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 M0R2C6 588 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 PAX4O43316 350 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 CYP21A2P08686 494 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 AKR1A1P14550 325 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 RPS6KB1P23443 525 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 GRIA4P48058 902 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 USP11P51784 963 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 ACLYP53396 1101 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 SOX4Q06945 474 aaPredicted RBP8.08□□□□□ -1.12
VPS13A-201ENST00000355766 PCDH1Q08174 1060 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 RAB3GAP1Q15042 981 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 NFKBIBQ15653 356 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 SPRED3Q2MJR0 410 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 NAA16Q6N069 864 aaPredicted RBP8.08□□□□□ -1.12
VPS13A-201ENST00000355766 TATDN1Q6P1N9 297 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 ZNF365Q70YC5 407 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 TMEM199Q8N511 208 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 ACER1Q8TDN7 264 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 NUP133Q8WUM0 1156 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 FBLIM1Q8WUP2 373 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 HERVK_113Q902F9 699 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 TMX3Q96JJ7 454 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 NEK1Q96PY6 1258 aa8.08□□□□□ -1.12
VPS13A-201ENST00000355766 STRBPQ96SI9 672 aaKnown RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms