RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MAFGO15525 162 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 TREHO43280 583 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 CD4P01730 458 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 RAD51AP2Q09MP3 1159 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 USP38Q8NB14 1042 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 PPP1R14CQ8TAE6 165 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 HAPLN3Q96S86 360 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 CLTCQ00610 1675 aaKnown RBP9.12□□□□□ -0.95
HMGB1-203ENST00000341423 A6NJR5 290 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 VCLP18206 1134 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 PIK3CAP42336 1068 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 SLC12A2P55011 1212 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 ARHGEF7Q14155 803 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 ZNF667Q5HYK9 610 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 ZNF484Q5JVG2 852 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 LUZP1Q86V48 1076 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 ZNF654Q8IZM8 581 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 LRRC43Q8N309 656 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 CCDC127Q96BQ5 260 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 DDX27Q96GQ7 796 aaKnown RBP9.12□□□□□ -0.95
HMGB1-203ENST00000341423 FAM84BQ96KN1 310 aaPredicted RBP9.12□□□□□ -0.95
HMGB1-203ENST00000341423 NELL2Q99435 816 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 MRPL4Q9BYD3 311 aaKnown RBP9.12□□□□□ -0.95
HMGB1-203ENST00000341423 FAM117AQ9C073 453 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 RHOBTB1O94844 696 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 NLRP11P59045 1033 aaKnown RBP9.12□□□□□ -0.95
HMGB1-203ENST00000341423 TRIM28Q13263 835 aaKnown RBP9.12□□□□□ -0.95
HMGB1-203ENST00000341423 PALB2Q86YC2 1186 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 ZNF668Q96K58 619 aaPredicted RBP9.12□□□□□ -0.95
HMGB1-203ENST00000341423 CGRRF1Q99675 332 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 LZTS3O60299 673 aaPredicted RBP9.12□□□□□ -0.95
HMGB1-203ENST00000341423 TJAP1Q5JTD0 557 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 RNF149Q8NC42 400 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 BADQ92934 168 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 PHF20Q9BVI0 1012 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 POLLQ9UGP5 575 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 FAM205AQ6ZU69 1335 aa9.12□□□□□ -0.95
HMGB1-203ENST00000341423 ADCY6O43306 1168 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 NTSR2O95665 410 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 PYGBP11216 843 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 KIAA1755Q5JYT7 1200 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 RABEPKQ7Z6M1 372 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 PDCD6IPQ8WUM4 868 aaKnown RBP9.11□□□□□ -0.95
HMGB1-203ENST00000341423 OMDQ99983 421 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 TRPV6Q9H1D0 765 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 EIF2AK4Q9P2K8 1649 aaKnown RBP9.11□□□□□ -0.95
HMGB1-203ENST00000341423 RIC1Q4ADV7 1423 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 N4BP1O75113 896 aaKnown RBP9.11□□□□□ -0.95
HMGB1-203ENST00000341423 G2E3Q7L622 706 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 GSTA5Q7RTV2 222 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 FERMT3Q86UX7 667 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 ZSCAN18Q8TBC5 510 aaPredicted RBP9.11□□□□□ -0.95
HMGB1-203ENST00000341423 PRAG1Q86YV5 1406 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 MYO3AQ8NEV4 1616 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 EIF3CLB5ME19 914 aaKnown RBP9.11□□□□□ -0.95
HMGB1-203ENST00000341423 MMP3P08254 477 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 BCRP11274 1271 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 HOXA10P31260 410 aaPredicted RBP9.11□□□□□ -0.95
HMGB1-203ENST00000341423 TUFMP49411 452 aaKnown RBP9.11□□□□□ -0.95
HMGB1-203ENST00000341423 DEUP1Q05D60 604 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 KRT81Q14533 505 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 PRPSAP1Q14558 356 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 NFE2Q16621 373 aaPredicted RBP9.11□□□□□ -0.95
HMGB1-203ENST00000341423 MAGEB10Q96LZ2 347 aaPredicted RBP9.11□□□□□ -0.95
HMGB1-203ENST00000341423 ODC1P11926 461 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 AFMP43652 599 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 LRRC8DQ7L1W4 858 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 GZF1Q9H116 711 aaPredicted RBP9.11□□□□□ -0.95
HMGB1-203ENST00000341423 NYAP2Q9P242 653 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.11□□□□□ -0.95
HMGB1-203ENST00000341423 GRXCR2A6NFK2 248 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 ZBTB5O15062 677 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 PPFIA4O75335 1185 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 RNF8O76064 485 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 SYPP08247 313 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 CDH18Q13634 790 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 C2orf27AQ580R0 203 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 WDR45BQ5MNZ6 344 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 NEDD1Q8NHV4 660 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 GMCL1Q96IK5 515 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 NGRNQ9NPE2 291 aaKnown RBP9.11□□□□□ -0.95
HMGB1-203ENST00000341423 DZANK1Q9NVP4 752 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 GTF3C3Q9Y5Q9 886 aa9.11□□□□□ -0.95
HMGB1-203ENST00000341423 DLC1Q96QB1 1528 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 TULP4Q9NRJ4 1543 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 MAN2B1O00754 1011 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 CLIC2O15247 247 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 DUSP11O75319 330 aaKnown RBP9.1□□□□□ -0.95
HMGB1-203ENST00000341423 APODP05090 189 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 DPP6P42658 865 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 RAPGEF1Q13905 1077 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 XKR3Q5GH77 459 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 CNNM4Q6P4Q7 775 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 PI16Q6UXB8 463 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 GPBP1Q86WP2 473 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 CD207Q9UJ71 328 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 CES2O00748 559 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 MED7O43513 233 aa9.1□□□□□ -0.95
HMGB1-203ENST00000341423 EN2P19622 333 aaPredicted RBP9.1□□□□□ -0.95
HMGB1-203ENST00000341423 RPIAP49247 311 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms