RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 PES1O00541 588 aaKnown RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 NKRFO15226 690 aaKnown RBP eCLIP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 CLTAP09496 248 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 VEGFAP15692 232 aaPredicted RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 ADD2P35612 726 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 PPP2R2AP63151 447 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 SAMD7Q7Z3H4 446 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 PRRT2Q7Z6L0 340 aaPredicted RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 TBC1D1Q86TI0 1168 aaPredicted RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 APLFQ8IW19 511 aaPredicted RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 CCDC63Q8NA47 563 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 CDCA5Q96FF9 252 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 TXLNGYQ9BZA5 131 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 FAM129AQ9BZQ8 928 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 EPB41L4BQ9H329 900 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 MMADHCQ9H3L0 296 aaPredicted RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 CCDC134Q9H6E4 229 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 ZNF70Q9UC06 446 aaPredicted RBP6.11□□□□□ -1.43
CSDE1-202ENST00000339438 ZFHX4Q86UP3 3567 aa6.11□□□□□ -1.43
CSDE1-202ENST00000339438 EIF4E1BA6NMX2 242 aaKnown RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 FLT3P36888 993 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 BNIP1Q12981 228 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 SBK1Q52WX2 424 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 KLHDC7AQ5VTJ3 777 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 MYLK4Q86YV6 388 aaPredicted RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 EIF1ADQ8N9N8 165 aaKnown RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 NUP133Q8WUM0 1156 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 PAGE5Q96GU1 130 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 MS4A14Q96JA4 679 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 A0A1W2PQC6 194 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 ADM5C9JUS6 153 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 WFS1O76024 890 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 PENKP01210 267 aaPredicted RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 SLC5A1P13866 664 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 RPL13P26373 211 aaKnown RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 CXCR5P32302 372 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 HPDP32754 393 aaPredicted RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 VEGFBP49765 207 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 AGBL2Q5U5Z8 902 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 GKAP1Q5VSY0 366 aaPredicted RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 MAMDC4Q6UXC1 1216 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 SMC1BQ8NDV3 1235 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 PBKQ96KB5 322 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 NUP88Q99567 741 aaPredicted RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 TSPYL2Q9H2G4 693 aaPredicted RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 NHEJ1Q9H9Q4 299 aaPredicted RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 DENND2AQ9ULE3 1009 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 MAST3O60307 1309 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 TMEM221A6NGB7 291 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 EVI5O60447 810 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 PLEKP08567 350 aaPredicted RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 SPATA31D3P0C874 917 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 TPP2P29144 1249 aaPredicted RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 VAV2P52735 878 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 RASA3Q14644 834 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 TTF1Q15361 905 aaPredicted RBP6.1□□□□□ -1.43
CSDE1-202ENST00000339438 SPATA31D4Q6ZUB0 917 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 MB21D1Q8N884 522 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 KBTBD3Q8NAB2 608 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 CHMP6Q96FZ7 201 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 VPS16Q9H269 839 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 MLXIPQ9HAP2 919 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 PRDM16Q9HAZ2 1276 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 EPB41L5Q9HCM4 733 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 JADE2Q9NQC1 790 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 HSFX1Q9UBD0 423 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 FLT1P17948 1338 aa6.1□□□□□ -1.43
CSDE1-202ENST00000339438 NCK2O43639 380 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 KRT86O43790 486 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 ATP2C2O75185 946 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 SMIM24O75264 130 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 LUC7L3O95232 432 aaKnown RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 OATP04181 439 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 CYP1A1P04798 512 aaPredicted RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 BCRP11274 1271 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 ATP2A2P16615 1042 aaKnown RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 ATP6V1C1P21283 382 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 HNRNPH3P31942 346 aaKnown RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 STAT6P42226 847 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 ERVK-9P63128 1117 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 CYP27A1Q02318 531 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 PPARDQ03181 441 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 PABPC4Q13310 644 aaKnown RBP eCLIP6.09□□□□□ -1.435e-11■■■□□ 15.5
CSDE1-202ENST00000339438 BIRC3Q13489 604 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 ALX1Q15699 326 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 CIAPIN1Q6FI81 312 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 IQCEQ6IPM2 695 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 PNMA8AQ86V59 439 aaPredicted RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 MDM1Q8TC05 714 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 WHAMMQ8TF30 809 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 HELLSQ9NRZ9 838 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 SYNPO2Q9UMS6 1093 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 SRPRBQ9Y5M8 271 aaKnown RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 MAFGO15525 162 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 IDH1O75874 414 aaKnown RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 BAG3O95817 575 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 IFIT1P09914 478 aaKnown RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 CCNB1P14635 433 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 IGHMBP2P38935 993 aaKnown RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 KLK7P49862 253 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms